PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73501-73550 / 86044 show all
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.2818
96.6216
100.0000
72.0930
4291542000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.3143
96.0145
98.6499
82.5698
10604410961512
80.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.6872
95.4167
97.9920
85.6042
687337321512
80.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5430
97.1279
100.0000
69.2827
3721136400
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2560
99.0686
99.4441
78.7870
65956266193715
40.5405
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.0491
98.9618
99.1365
81.8417
41944442483715
40.5405
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6262
99.2553
100.0000
69.5205
239918237100
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1128
99.3482
98.8786
72.9414
309402033094935141
11.6809
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7584
99.2747
98.2475
76.8599
194371421950934840
11.4943
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
0.0000
0.0000
120000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7222
99.4720
99.9738
61.6817
11491611144031
33.3333
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.1207
98.7596
99.4845
63.9164
47776048252519
76.0000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
98.9388
98.5705
99.3099
68.9036
31034531662216
72.7273
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.4642
99.1114
99.8195
47.8833
167315165933
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_51to200*
93.3333
87.5000
100.0000
96.7290
1421400
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_51to200het
88.8889
80.0000
100.0000
97.8723
82800
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
88.4615
60600
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8802
99.9362
99.8243
43.3188
626446250113
27.2727
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.9262
99.8277
45.6225
40623405571
14.2857
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.9546
99.8181
38.5067
22001219542
50.0000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6239
99.8416
99.4072
41.3357
107151710732647
10.9375
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.4328
99.7924
99.0758
46.4998
6730146754636
9.5238
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.9248
99.9749
29.7121
39843397811
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.7853
89.1089
98.9796
92.5362
90119711
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200het
92.8800
87.8788
98.4848
94.0000
5886511
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
95.5224
91.4286
100.0000
84.9765
3233200
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7439
99.7184
99.7695
31.0247
389511389593
33.3333
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6976
99.7579
99.6374
34.5809
24726247393
33.3333
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8596
99.7197
100.0000
23.7942
14234142200
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_51to200*
76.9231
62.5000
100.0000
95.9350
53500
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_51to200het
80.0000
66.6667
100.0000
96.1538
42400
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
94.7368
11100