PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73351-73400 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | HG002complexvar | * | 95.9712 | 96.9985 | 94.9655 | 20.7202 | 731742 | 22643 | 718679 | 38100 | 8358 | 21.9370 | |
| ciseli-custom | SNP | * | HG002complexvar | het | 95.7970 | 95.7987 | 95.7952 | 20.3525 | 445943 | 19557 | 439539 | 19293 | 621 | 3.2188 | |
| ciseli-custom | SNP | * | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ciseli-custom | SNP | * | HG002complexvar | homalt | 96.2605 | 98.9760 | 93.6900 | 21.2638 | 285620 | 2955 | 278961 | 18788 | 7728 | 41.1326 | |
| ciseli-custom | SNP | * | HG002compoundhet | * | 73.2436 | 85.0050 | 64.3413 | 46.5864 | 21950 | 3872 | 21988 | 12186 | 1203 | 9.8720 | |
| ciseli-custom | SNP | * | HG002compoundhet | het | 65.9081 | 78.7276 | 56.6789 | 49.8597 | 11162 | 3016 | 11240 | 8591 | 230 | 2.6772 | |
| ciseli-custom | SNP | * | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | * | HG002compoundhet | homalt | 82.3846 | 93.4613 | 73.6552 | 42.1506 | 10077 | 705 | 10037 | 3590 | 971 | 27.0474 | |
| ciseli-custom | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9973 | 0 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | SNP | * | func_cds | * | 97.9137 | 99.4601 | 96.4146 | 25.6110 | 18052 | 98 | 17990 | 669 | 42 | 6.2780 | |
| ciseli-custom | SNP | * | func_cds | het | 97.0747 | 99.2205 | 95.0198 | 27.5142 | 11074 | 87 | 11047 | 579 | 4 | 0.6908 | |
| ciseli-custom | SNP | * | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 35.7143 | 9 | 1 | 9 | 0 | 0 | ||
| ciseli-custom | SNP | * | func_cds | homalt | 99.2844 | 99.8567 | 98.7187 | 22.2148 | 6969 | 10 | 6934 | 90 | 38 | 42.2222 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 76.2286 | 96.1797 | 63.1327 | 74.0117 | 4582 | 182 | 4615 | 2695 | 108 | 4.0074 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 69.5898 | 94.9602 | 54.9176 | 73.3767 | 2864 | 152 | 2898 | 2379 | 40 | 1.6814 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.8951 | 98.2838 | 84.5396 | 75.5036 | 1718 | 30 | 1717 | 314 | 68 | 21.6561 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.8947 | 97.3720 | 81.7754 | 63.9228 | 54169 | 1462 | 54352 | 12113 | 797 | 6.5797 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.5234 | 96.3184 | 76.9043 | 63.8905 | 34115 | 1304 | 34337 | 10312 | 215 | 2.0850 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.3693 | 99.2326 | 91.7955 | 63.9797 | 20044 | 155 | 20005 | 1788 | 579 | 32.3826 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.4169 | 95.5954 | 72.4316 | 76.0055 | 43689 | 2013 | 43987 | 16742 | 965 | 5.7640 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 76.7889 | 93.7761 | 65.0122 | 76.1162 | 26925 | 1787 | 27218 | 14648 | 266 | 1.8160 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.5617 | 98.6804 | 88.9479 | 75.7364 | 16751 | 224 | 16756 | 2082 | 698 | 33.5255 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5298 | 97.9511 | 80.7619 | 65.1199 | 4207 | 88 | 4219 | 1005 | 39 | 3.8806 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.2619 | 97.2450 | 74.3373 | 66.4617 | 2612 | 74 | 2636 | 910 | 12 | 1.3187 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.7044 | 99.1299 | 94.3948 | 61.8169 | 1595 | 14 | 1583 | 94 | 27 | 28.7234 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.2279 | 98.0433 | 75.3754 | 62.9512 | 6063 | 121 | 6073 | 1984 | 52 | 2.6210 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 80.5000 | 97.2526 | 68.6708 | 63.3133 | 3823 | 108 | 3849 | 1756 | 13 | 0.7403 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.8802 | 99.4227 | 90.7347 | 62.0390 | 2239 | 13 | 2223 | 227 | 39 | 17.1806 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 85.0816 | 98.0660 | 75.1335 | 65.0221 | 3803 | 75 | 3798 | 1257 | 30 | 2.3866 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.5908 | 97.1532 | 68.8529 | 65.1322 | 2423 | 71 | 2425 | 1097 | 4 | 0.3646 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.3610 | 99.7108 | 89.5561 | 64.7005 | 1379 | 4 | 1372 | 160 | 26 | 16.2500 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.2957 | 79.5337 | 19.4805 | 82.5076 | 307 | 79 | 315 | 1302 | 53 | 4.0707 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.2261 | 75.3623 | 15.8754 | 79.0455 | 208 | 68 | 214 | 1134 | 22 | 1.9400 | |