PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73101-73150 / 86044 show all
ciseli-customSNP*segdupwithalt*
0.0000
100.0000
00000
ciseli-customSNP*segdupwithalthet
0.0000
100.0000
00000
ciseli-customSNP*segdupwithalthetalt
0.0000
100.0000
00000
ciseli-customSNP*segdupwithalthomalt
0.0000
100.0000
00000
ciseli-customSNP*tech_badpromoters*
85.2439
94.9045
77.3684
48.6486
1498147431
2.3256
ciseli-customSNP*tech_badpromotershet
76.5957
93.5065
64.8649
45.0495
72572390
0.0000
ciseli-customSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ciseli-customSNP*tech_badpromotershomalt
95.5888
96.2500
94.9367
52.9762
7737541
25.0000
ciseli-customSNPti**
98.3062
98.8974
97.7221
19.7040
2062524229942057571479637893
16.4564
ciseli-customSNPti*het
97.9524
98.4710
97.4391
21.0644
126229719600125985833111542
1.6369
ciseli-customSNPti*hetalt
87.1087
81.2715
93.8492
39.4958
4731094733117
54.8387
ciseli-customSNPti*homalt
98.8778
99.5909
98.1749
17.4213
7997543285797240148217334
49.4838
ciseli-customSNPtiHG002complexvar*
96.3915
97.0905
95.7026
18.7897
49364414793488642219425540
25.2484
ciseli-customSNPtiHG002complexvarhet
96.3296
95.9112
96.7516
18.3708
3018961287029942210053353
3.5114
ciseli-customSNPtiHG002complexvarhetalt
68.4524
55.5556
89.1473
41.3636
11592115149
64.2857
ciseli-customSNPtiHG002complexvarhomalt
96.5088
99.0536
94.0915
19.4065
1916331831189105118755178
43.6042
ciseli-customSNPtiHG002compoundhet*
76.3715
85.1127
69.2586
41.8951
148762602149286626715
10.7908
ciseli-customSNPtiHG002compoundhethet
71.3901
79.1057
65.0459
46.7631
7519198675854076149
3.6555
ciseli-customSNPtiHG002compoundhethetalt
89.3738
81.3472
99.1579
17.9620
47110847142
50.0000
ciseli-customSNPtiHG002compoundhethomalt
81.8243
93.1296
72.9667
35.5461
688650868722546564
22.1524
ciseli-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00100
ciseli-customSNPtidecoyhet
0.0000
100.0000
00000
ciseli-customSNPtidecoyhetalt
0.0000
100.0000
00000
ciseli-customSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9958
00100
ciseli-customSNPtifunc_cds*
98.7839
99.4488
98.1278
24.0438
13711761368026131
11.8774
ciseli-customSNPtifunc_cdshet
98.4573
99.2121
97.7138
25.9135
84376784201972
1.0152
ciseli-customSNPtifunc_cdshetalt
93.3333
87.5000
100.0000
41.6667
71700
ciseli-customSNPtifunc_cdshomalt
99.3195
99.8483
98.7963
20.7719
5267852536429
45.3125
ciseli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.1047
96.5517
66.9981
74.4486
31361123167156081
5.1923
ciseli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
72.9289
95.5040
58.9859
74.2486
1933911966136732
2.3409
ciseli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
71.4286
00020
0.0000
ciseli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.8911
98.2843
86.2787
74.9189
120321120119149
25.6545
ciseli-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ciseli-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ciseli-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ciseli-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.2783
97.3461
80.7559
60.7530
27217742274786548433
6.6127
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6682
96.2747
75.5590
61.4479
17186665174025629124
2.2029
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
44.4444
66.6667
33.3333
73.9130
42483
37.5000
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3321
99.2576
91.7054
59.1877
100277510072911306
33.5895
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
84.3407
95.6876
75.3996
74.3623
298001343300929818643
6.5492
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.2334
93.9527
68.5015
74.7853
183951184186428572188
2.1932
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
71.4286
83.3333
62.5000
85.1852
1021060
0.0000
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.2432
98.6409
90.2208
73.3792
11395157114401240455
36.6935
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
90.5999
98.1413
84.1348
64.8517
290455292255127
4.9002
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
87.0437
97.4877
78.6210
66.4142
17854618134939
1.8256
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
80.0000
00010
0.0000
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.1138
99.2021
95.1115
61.2625
1119911095718
31.5789
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000