PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72951-73000 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 66.6667 | 75.0000 | 60.0000 | 90.9561 | 21 | 7 | 21 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 50.5495 | 48.9362 | 52.2727 | 95.2586 | 23 | 24 | 23 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 67.6923 | 75.8621 | 61.1111 | 90.8397 | 22 | 7 | 22 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 98.5258 | 3 | 3 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 25.0000 | 25.0000 | 25.0000 | 98.6486 | 1 | 3 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.1982 | 2 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 60.6061 | 55.5556 | 66.6667 | 97.9812 | 10 | 8 | 10 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 47.6190 | 45.4545 | 50.0000 | 98.1273 | 5 | 6 | 5 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6077 | 5 | 0 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 51.2821 | 45.4545 | 58.8235 | 97.9858 | 10 | 12 | 10 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 40.0000 | 35.7143 | 45.4545 | 98.1788 | 5 | 9 | 5 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5000 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5410 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_siren | * | 62.3762 | 61.8861 | 62.8743 | 84.5131 | 315 | 194 | 315 | 186 | 97 | 52.1505 | |
| ciseli-custom | INDEL | D6_15 | map_siren | het | 69.4186 | 71.7857 | 67.2026 | 85.2327 | 201 | 79 | 209 | 102 | 21 | 20.5882 | |
| ciseli-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 7.0707 | 0.0000 | 0.0000 | 7 | 92 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_siren | homalt | 66.5025 | 82.3077 | 55.7895 | 83.1709 | 107 | 23 | 106 | 84 | 76 | 90.4762 | |
| ciseli-custom | INDEL | D6_15 | segdup | * | 68.3802 | 65.4450 | 71.5909 | 94.3207 | 125 | 66 | 126 | 50 | 32 | 64.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | het | 78.3734 | 80.4348 | 76.4151 | 94.8494 | 74 | 18 | 81 | 25 | 8 | 32.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 12.2449 | 0.0000 | 0.0000 | 6 | 43 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | segdup | homalt | 75.0000 | 90.0000 | 64.2857 | 93.2757 | 45 | 5 | 45 | 25 | 24 | 96.0000 | |
| ciseli-custom | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | het | 70.5882 | 60.0000 | 85.7143 | 58.8235 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I16_PLUS | * | * | 18.6757 | 11.2906 | 53.9910 | 75.8984 | 720 | 5657 | 717 | 611 | 525 | 85.9247 | |
| ciseli-custom | INDEL | I16_PLUS | * | het | 16.1440 | 9.3451 | 59.2506 | 84.8956 | 254 | 2464 | 253 | 174 | 123 | 70.6897 | |
| ciseli-custom | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | * | homalt | 37.7444 | 29.7886 | 51.4983 | 66.4182 | 465 | 1096 | 464 | 437 | 402 | 91.9908 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | * | 21.4346 | 13.1398 | 58.1315 | 77.3688 | 172 | 1137 | 168 | 121 | 93 | 76.8595 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | het | 19.4609 | 11.4286 | 65.4867 | 81.3223 | 76 | 589 | 74 | 39 | 19 | 48.7179 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.2985 | 0.0000 | 0.0000 | 1 | 334 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 39.0246 | 30.7443 | 53.4091 | 73.8095 | 95 | 214 | 94 | 82 | 74 | 90.2439 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | * | 0.6022 | 0.3733 | 1.5564 | 60.4311 | 8 | 2135 | 8 | 506 | 462 | 91.3043 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 8.3916 | 12.7660 | 6.2500 | 77.0883 | 6 | 41 | 6 | 90 | 75 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0478 | 0.0000 | 0.0000 | 1 | 2092 | 0 | 0 | 0 | ||