PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72301-72350 / 86044 show all
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
96.5046
98.2128
94.8548
61.3261
107161951071158192
15.8348
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
95.9357
97.5922
94.3344
61.2325
6850169686041218
4.3689
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
90.9091
100.0000
83.3333
66.6667
50510
0.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.5412
99.3311
95.8146
61.4853
386126384616874
44.0476
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
87.2844
97.5309
78.9862
44.6999
72681847277193672
3.7190
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
82.5695
96.6091
72.0927
44.6474
45301594544175924
1.3644
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
61.5385
80.0000
50.0000
50.0000
41441
25.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
96.5171
99.1298
94.0386
44.7974
273424272917347
27.1676
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
35.8093
88.0952
22.4719
78.2396
375401383
2.1739
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
34.0392
86.1111
21.2121
74.2590
315351301
0.7692
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
55.5556
100.0000
38.4615
92.6554
60582
25.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
91.7959
97.7681
86.5114
40.4602
337377338052726
4.9336
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
88.9790
96.7259
82.3810
40.2277
20687020764444
0.9009
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
96.7002
99.5423
94.0159
40.8529
1305613048322
26.5060
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
13.3333
100.0000
7.1429
86.0000
101130
0.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
15.3846
100.0000
8.3333
80.6452
101110
0.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
94.7368
00020
0.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtvmap_l100_m0_e0*
78.9086
74.1158
84.3641
75.9006
8215286982121522391
25.6899
ciseli-customSNPtvmap_l100_m0_e0het
74.3908
68.0559
82.0260
79.9973
491523074915107742
3.8997
ciseli-customSNPtvmap_l100_m0_e0hetalt
66.6667
56.2500
81.8182
78.0000
97921
50.0000
ciseli-customSNPtvmap_l100_m0_e0homalt
86.8291
85.5694
88.1265
64.0732
32915553288443348
78.5553
ciseli-customSNPtvmap_l100_m1_e0*
82.8010
79.0049
86.9802
71.6783
193575144193472896701
24.2058
ciseli-customSNPtvmap_l100_m1_e0het
78.9799
73.9962
84.6833
75.5859
11408400911406206373
3.5385
ciseli-customSNPtvmap_l100_m1_e0hetalt
71.2329
63.4146
81.2500
73.7705
26152665
83.3333
ciseli-customSNPtvmap_l100_m1_e0homalt
89.0533
87.6147
90.5399
62.3935
792311207915827623
75.3325
ciseli-customSNPtvmap_l100_m2_e0*
83.0120
79.3073
87.0798
73.4407
198535180198422944713
24.2188
ciseli-customSNPtvmap_l100_m2_e0het
79.2677
74.3804
84.8423
77.0207
11735404211732209675
3.5782
ciseli-customSNPtvmap_l100_m2_e0hetalt
72.0000
64.2857
81.8182
76.5957
27152765
83.3333
ciseli-customSNPtvmap_l100_m2_e0homalt
89.1677
87.8120
90.5658
64.9670
809111238083842633
75.1781
ciseli-customSNPtvmap_l100_m2_e1*
83.0739
79.3893
87.1172
73.4544
200725211200572966720
24.2751
ciseli-customSNPtvmap_l100_m2_e1het
79.3676
74.5012
84.9142
77.0349
11874406411871210975
3.5562
ciseli-customSNPtvmap_l100_m2_e1hetalt
71.7949
65.1163
80.0000
75.6944
28152876
85.7143
ciseli-customSNPtvmap_l100_m2_e1homalt
89.1763
87.8306
90.5639
64.9644
817011328158850639
75.1765
ciseli-customSNPtvmap_l125_m0_e0*
75.4859
70.1855
81.6523
81.6008
4654197746551046265
25.3346
ciseli-customSNPtvmap_l125_m0_e0het
70.2747
63.3947
78.8298
84.9536
27901611278974926
3.4713