PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72051-72100 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 46.8191 | 40.0480 | 56.3456 | 64.3182 | 2002 | 2997 | 1989 | 1541 | 1431 | 92.8618 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 57.9068 | 46.9489 | 75.5372 | 67.0120 | 854 | 965 | 914 | 296 | 261 | 88.1757 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 3.3661 | 0.0000 | 0.0000 | 65 | 1866 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 60.3971 | 86.7094 | 46.3362 | 62.7309 | 1083 | 166 | 1075 | 1245 | 1170 | 93.9759 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 41.0817 | 36.4955 | 46.9862 | 60.8362 | 654 | 1138 | 647 | 730 | 671 | 91.9178 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.5743 | 43.1856 | 70.5446 | 64.5614 | 263 | 346 | 285 | 119 | 105 | 88.2353 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 3.1888 | 0.0000 | 0.0000 | 25 | 759 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.9379 | 91.7293 | 37.2045 | 59.0488 | 366 | 33 | 362 | 611 | 566 | 92.6350 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.2522 | 20.4082 | 29.8805 | 51.4507 | 150 | 585 | 150 | 352 | 340 | 96.5909 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 23.8908 | 17.7515 | 36.5217 | 59.5070 | 30 | 139 | 42 | 73 | 70 | 95.8904 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 2.7335 | 0.0000 | 0.0000 | 12 | 427 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.0233 | 85.0394 | 27.9070 | 48.4000 | 108 | 19 | 108 | 279 | 270 | 96.7742 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 70.1834 | 63.2184 | 78.8732 | 73.6059 | 55 | 32 | 56 | 15 | 14 | 93.3333 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 76.3636 | 91.3043 | 65.6250 | 76.2963 | 21 | 2 | 21 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 39.3162 | 33.8235 | 46.9388 | 96.7399 | 23 | 45 | 23 | 26 | 20 | 76.9231 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.4238 | 22.7273 | 91.6667 | 97.8799 | 10 | 34 | 11 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 11.1111 | 0.0000 | 0.0000 | 1 | 8 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 46.1538 | 80.0000 | 32.4324 | 96.0512 | 12 | 3 | 12 | 25 | 20 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.8014 | 43.6913 | 63.6086 | 59.7043 | 419 | 540 | 416 | 238 | 213 | 89.4958 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.3990 | 50.8728 | 84.1085 | 55.4404 | 204 | 197 | 217 | 41 | 32 | 78.0488 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 4.8780 | 0.0000 | 0.0000 | 16 | 312 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.5783 | 86.5217 | 50.2525 | 62.0690 | 199 | 31 | 199 | 197 | 181 | 91.8782 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.1207 | 23.8636 | 44.7205 | 61.1580 | 147 | 469 | 144 | 178 | 166 | 93.2584 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 44.1767 | 33.5366 | 64.7059 | 59.2000 | 55 | 109 | 66 | 36 | 29 | 80.5556 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 3.4286 | 0.0000 | 0.0000 | 12 | 338 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.8339 | 78.4314 | 35.4545 | 62.0035 | 80 | 22 | 78 | 142 | 137 | 96.4789 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.9524 | 49.6815 | 72.4771 | 51.3393 | 78 | 79 | 79 | 30 | 29 | 96.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 73.3791 | 60.6557 | 92.8571 | 56.2500 | 37 | 24 | 39 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 88.8889 | 59.7015 | 47.6562 | 40 | 5 | 40 | 27 | 26 | 96.2963 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.4202 | 43.4783 | 60.0000 | 40.6780 | 20 | 26 | 21 | 14 | 13 | 92.8571 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.0000 | 0.0000 | 0.0000 | 4 | 21 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 68.5714 | 92.3077 | 54.5455 | 45.0000 | 12 | 1 | 12 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 48.0349 | 35.7143 | 73.3333 | 93.9271 | 10 | 18 | 11 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 46.4088 | 31.5789 | 87.5000 | 93.2773 | 6 | 13 | 7 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 94.5312 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 43.1655 | 33.3333 | 61.2245 | 89.3709 | 29 | 58 | 30 | 19 | 14 | 73.6842 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 54.4803 | 41.3043 | 80.0000 | 88.4793 | 19 | 27 | 20 | 5 | 3 | 60.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.2821 | 66.6667 | 41.6667 | 90.1639 | 10 | 5 | 10 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 44.1674 | 34.4444 | 61.5385 | 89.4737 | 31 | 59 | 32 | 20 | 14 | 70.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |