PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71501-71550 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.5476 | 77.2827 | 68.3592 | 65.9014 | 13771 | 4048 | 14661 | 6786 | 3680 | 54.2293 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.0479 | 0.0000 | 0.0000 | 568 | 13464 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 60.9265 | 84.9007 | 47.5105 | 54.7800 | 9750 | 1734 | 9733 | 10753 | 9871 | 91.7976 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.5469 | 76.4799 | 68.9986 | 69.9494 | 23308 | 7168 | 24351 | 10941 | 4932 | 45.0781 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 4.0108 | 0.0000 | 0.0000 | 670 | 16035 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.8636 | 83.8324 | 52.8950 | 61.2756 | 15229 | 2937 | 15174 | 13513 | 12202 | 90.2982 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 61.6156 | 61.1636 | 62.0744 | 51.1512 | 22381 | 14211 | 22533 | 13767 | 10331 | 75.0418 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.1186 | 81.3959 | 71.4838 | 54.5214 | 12828 | 2932 | 13489 | 5381 | 2743 | 50.9757 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 4.5442 | 0.0000 | 0.0000 | 476 | 9999 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1835 | 87.6412 | 51.8876 | 46.8905 | 9077 | 1280 | 9044 | 8386 | 7588 | 90.4841 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.2937 | 22.4179 | 29.0158 | 55.9542 | 471 | 1630 | 513 | 1255 | 1101 | 87.7291 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.7717 | 31.2245 | 36.7713 | 63.1405 | 153 | 337 | 246 | 423 | 326 | 77.0686 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.0735 | 0.0000 | 0.0000 | 51 | 1201 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 36.6255 | 74.3733 | 24.2948 | 50.0227 | 267 | 92 | 267 | 832 | 775 | 93.1490 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.5338 | 92.8273 | 90.2759 | 58.4295 | 26233 | 2027 | 26180 | 2820 | 1567 | 55.5674 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4417 | 95.1488 | 89.8844 | 58.8124 | 15632 | 797 | 15630 | 1759 | 720 | 40.9323 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 5.4206 | 0.0000 | 0.0000 | 29 | 506 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.2062 | 93.5907 | 90.8621 | 57.8426 | 10572 | 724 | 10550 | 1061 | 847 | 79.8303 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 8.4568 | 34.6774 | 4.8156 | 99.4220 | 43 | 81 | 47 | 929 | 32 | 3.4446 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 5.7762 | 27.5862 | 3.2258 | 99.1721 | 24 | 63 | 29 | 870 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 2 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 36.2774 | 80.9524 | 23.3766 | 99.8723 | 17 | 4 | 18 | 59 | 32 | 54.2373 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.3978 | 74.0332 | 72.7731 | 56.7536 | 14703 | 5157 | 14714 | 5505 | 3111 | 56.5123 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.6648 | 84.2067 | 75.5878 | 57.5613 | 9352 | 1754 | 9484 | 3063 | 1008 | 32.9089 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 3.5794 | 0.0000 | 0.0000 | 96 | 2586 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 76.2662 | 86.5448 | 68.1700 | 55.3642 | 5255 | 817 | 5230 | 2442 | 2103 | 86.1179 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.2067 | 39.4727 | 40.9685 | 65.1113 | 1048 | 1607 | 1066 | 1536 | 1023 | 66.6016 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 54.8008 | 64.3595 | 47.7143 | 68.5676 | 623 | 345 | 668 | 732 | 276 | 37.7049 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 2.6778 | 0.0000 | 0.0000 | 32 | 1163 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 46.8164 | 79.8780 | 33.1115 | 59.9867 | 393 | 99 | 398 | 804 | 747 | 92.9104 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 76.5465 | 76.6078 | 76.4854 | 46.7535 | 5158 | 1575 | 5162 | 1587 | 1041 | 65.5955 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.3637 | 87.9716 | 81.0401 | 48.2088 | 3218 | 440 | 3257 | 762 | 318 | 41.7323 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.5753 | 0.0000 | 0.0000 | 33 | 890 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 78.0779 | 88.6152 | 69.7802 | 44.4557 | 1907 | 245 | 1905 | 825 | 723 | 87.6364 | |
| ciseli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||