PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70451-70500 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | * | * | 97.2249 | 96.4630 | 97.9990 | 52.8733 | 23945 | 878 | 23949 | 489 | 448 | 91.6155 | |
| ckim-dragen | INDEL | I6_15 | * | het | 98.9990 | 98.7043 | 99.2956 | 59.4838 | 9903 | 130 | 9867 | 70 | 31 | 44.2857 | |
| ckim-dragen | INDEL | I6_15 | * | hetalt | 95.5238 | 91.4630 | 99.9619 | 38.0544 | 7821 | 730 | 7861 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | * | homalt | 96.6294 | 99.7115 | 93.7321 | 54.6498 | 6221 | 18 | 6221 | 416 | 414 | 99.5192 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | * | 98.1726 | 97.5167 | 98.8375 | 57.3399 | 4673 | 119 | 4676 | 55 | 54 | 98.1818 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | het | 99.2082 | 98.6412 | 99.7818 | 59.3866 | 2323 | 32 | 2286 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | hetalt | 96.4437 | 93.1316 | 100.0000 | 55.3409 | 1139 | 84 | 1179 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | HG002complexvar | homalt | 97.8586 | 99.7529 | 96.0349 | 55.1086 | 1211 | 3 | 1211 | 50 | 50 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | * | 93.2228 | 91.6135 | 94.8896 | 36.8488 | 8040 | 736 | 8040 | 433 | 432 | 99.7691 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | het | 92.5867 | 97.1154 | 88.4615 | 85.5556 | 202 | 6 | 161 | 21 | 20 | 95.2381 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | hetalt | 95.5341 | 91.4607 | 99.9873 | 29.2729 | 7808 | 729 | 7849 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | homalt | 12.7119 | 96.7742 | 6.8027 | 58.3176 | 30 | 1 | 30 | 411 | 411 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 43.4211 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7238 | 91.2679 | 98.4516 | 67.1749 | 763 | 73 | 763 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2845 | 95.5466 | 99.0868 | 80.4290 | 236 | 11 | 217 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.6974 | 88.3019 | 99.7951 | 47.9744 | 468 | 62 | 487 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9134 | 100.0000 | 86.7647 | 77.6316 | 59 | 0 | 59 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9137 | 96.7068 | 99.1511 | 64.1489 | 5139 | 175 | 5139 | 44 | 40 | 90.9091 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0173 | 98.5075 | 99.5324 | 77.0540 | 1518 | 23 | 1490 | 7 | 3 | 42.8571 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4894 | 95.1923 | 99.9000 | 43.6220 | 2970 | 150 | 2998 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3094 | 99.6937 | 95.0365 | 73.7548 | 651 | 2 | 651 | 34 | 34 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4560 | 96.0456 | 98.9084 | 63.8644 | 6072 | 250 | 6071 | 67 | 60 | 89.5522 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5612 | 97.7676 | 99.3678 | 76.3607 | 1927 | 44 | 1886 | 12 | 6 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0392 | 94.3279 | 99.9110 | 42.3116 | 3326 | 200 | 3366 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.5802 | 99.2727 | 94.0299 | 72.0565 | 819 | 6 | 819 | 52 | 51 | 98.0769 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0437 | 91.5730 | 98.7879 | 71.6007 | 163 | 15 | 163 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2025 | 93.8272 | 98.7013 | 77.4854 | 76 | 5 | 76 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.4643 | 51 | 10 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0079 | 98.5876 | 99.4318 | 70.3953 | 349 | 5 | 350 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1501 | 98.8701 | 99.4318 | 73.9645 | 175 | 2 | 175 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 70.5696 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3797 | 99.1736 | 99.5868 | 69.7500 | 240 | 2 | 241 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 72.0824 | 122 | 0 | 122 | 0 | 0 | ||