PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1404 1405 1406 1407 1408 1409 1410 1411 1412 ... 1720 1721 » 70351-70400 / 86044 show all
ckim-dragen	SNP	ti	map_l250_m2_e1	*	97.3249	97.8132	96.8415	89.7690	4965	111	4967	162	20	12.3457
ckim-dragen	SNP	ti	map_l250_m2_e1	het	96.3677	97.2719	95.4802	91.4419	3209	90	3211	152	11	7.2368
ckim-dragen	SNP	ti	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	90.5660	5	0	5	0	0
ckim-dragen	SNP	ti	map_l250_m2_e1	homalt	99.1226	98.8149	99.4321	83.6687	1751	21	1751	10	9	90.0000
ckim-dragen	SNP	ti	map_siren	*	99.0224	99.5177	98.5321	56.8522	99871	484	99880	1488	162	10.8871
ckim-dragen	SNP	ti	map_siren	het	98.6081	99.5319	97.7013	60.9808	62090	292	62097	1461	137	9.3771
ckim-dragen	SNP	ti	map_siren	hetalt	98.2759	100.0000	96.6102	72.1698	57	0	57	2	2	100.0000
ckim-dragen	SNP	ti	map_siren	homalt	99.7132	99.4936	99.9338	47.4447	37724	192	37726	25	23	92.0000
ckim-dragen	SNP	ti	segdup	*	98.5623	99.8106	97.3449	91.6401	19500	37	19505	532	9	1.6917
ckim-dragen	SNP	ti	segdup	het	97.7495	99.7922	95.7888	93.1126	12005	25	12010	528	5	0.9470
ckim-dragen	SNP	ti	segdup	hetalt	80.0000	100.0000	66.6667	98.6607	2	0	2	1	1	100.0000
ckim-dragen	SNP	ti	segdup	homalt	99.9000	99.8401	99.9600	86.9440	7493	12	7493	3	3	100.0000
ckim-dragen	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	tech_badpromoters	*	98.8235	98.8235	98.8235	42.5676	84	1	84	1	1	100.0000
ckim-dragen	SNP	ti	tech_badpromoters	het	98.8506	97.7273	100.0000	41.8919	43	1	43	0	0
ckim-dragen	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	43.2432	41	0	41	1	1	100.0000
ckim-dragen	SNP	tv	*	*	99.8136	99.9495	99.6782	25.0811	969200	490	969499	3130	164	5.2396
ckim-dragen	SNP	tv	*	het	99.7113	99.9417	99.4820	27.9772	591351	345	591544	3080	126	4.0909
ckim-dragen	SNP	tv	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
ckim-dragen	SNP	tv	*	homalt	99.9757	99.9621	99.9894	19.9141	376980	143	377083	40	29	72.5000
ckim-dragen	SNP	tv	HG002complexvar	*	99.9267	99.9175	99.9359	22.5633	245949	203	246200	158	80	50.6329
ckim-dragen	SNP	tv	HG002complexvar	het	99.9058	99.9098	99.9019	22.2740	150595	136	150740	148	70	47.2973
ckim-dragen	SNP	tv	HG002complexvar	hetalt	99.8384	99.6774	100.0000	39.2996	309	1	312	0	0
ckim-dragen	SNP	tv	HG002complexvar	homalt	99.9600	99.9306	99.9895	22.9484	95045	66	95148	10	10	100.0000
ckim-dragen	SNP	tv	HG002compoundhet	*	99.7984	99.7422	99.8546	49.3913	8900	23	8925	13	8	61.5385
ckim-dragen	SNP	tv	HG002compoundhet	het	99.7327	99.6362	99.8294	55.7255	4656	17	4682	8	3	37.5000
ckim-dragen	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
ckim-dragen	SNP	tv	HG002compoundhet	homalt	99.8672	99.8819	99.8524	43.2020	3384	4	3383	5	5	100.0000
ckim-dragen	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	func_cds	*	99.3521	99.9771	98.7347	37.1039	4370	1	4370	56	0	0.0000
ckim-dragen	SNP	tv	func_cds	het	98.9383	99.9624	97.9351	42.1131	2656	1	2656	56	0	0.0000
ckim-dragen	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	64.2857	10	0	10	0	0
ckim-dragen	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	26.6781	1704	0	1704	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.7487	98.3509	99.1498	68.6809	1491	25	1516	13	2	15.3846
ckim-dragen	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.7905	98.1855	99.4030	70.9117	974	18	999	6	2	33.3333
ckim-dragen	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	98.6641	98.6641	98.6641	63.0726	517	7	517	7	0	0.0000
ckim-dragen	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8358	99.8591	99.8124	64.8592	27639	39	27673	52	16	30.7692
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7926	99.8634	99.7220	66.5121	17544	24	17576	49	13	26.5306

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge