PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
70301-70350 / 86044 show all
ckim-dragenSNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
77.9412
3003000
ckim-dragenSNPtimap_l100_m2_e0homalt
99.6194
99.3610
99.8792
57.3994
18192117181972220
90.9091
ckim-dragenSNPtimap_l100_m2_e1*
98.6777
99.2968
98.0664
68.9837
4913734849145969108
11.1455
ckim-dragenSNPtimap_l100_m2_e1het
98.1227
99.2603
97.0108
73.2091
307312293073494788
9.2925
ckim-dragenSNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
77.3723
3103100
ckim-dragenSNPtimap_l100_m2_e1homalt
99.6178
99.3565
99.8804
57.3860
18375119183802220
90.9091
ckim-dragenSNPtimap_l125_m0_e0*
98.1359
98.7776
97.5025
75.7277
126061561261032339
12.0743
ckim-dragenSNPtimap_l125_m0_e0het
97.4340
98.5598
96.3335
79.4732
8144119814531027
8.7097
ckim-dragenSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
81.3953
80800
ckim-dragenSNPtimap_l125_m0_e0homalt
99.4419
99.1761
99.7092
62.9046
44543744571312
92.3077
ckim-dragenSNPtimap_l125_m1_e0*
98.4145
99.1171
97.7219
72.4285
290762592908367879
11.6519
ckim-dragenSNPtimap_l125_m1_e0het
97.7308
99.0200
96.4747
76.6075
180871791808966163
9.5310
ckim-dragenSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
75.0000
2402400
ckim-dragenSNPtimap_l125_m1_e0homalt
99.5597
99.2757
99.8453
60.3228
1096580109701716
94.1176
ckim-dragenSNPtimap_l125_m2_e0*
98.4121
99.1176
97.7165
74.4145
299912672999870181
11.5549
ckim-dragenSNPtimap_l125_m2_e0het
97.7337
99.0305
96.4704
78.2642
186931831869568465
9.5029
ckim-dragenSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.5714
2402400
ckim-dragenSNPtimap_l125_m2_e0homalt
99.5541
99.2604
99.8495
63.2256
1127484112791716
94.1176
ckim-dragenSNPtimap_l125_m2_e1*
98.4185
99.1233
97.7236
74.4858
303012683030870681
11.4731
ckim-dragenSNPtimap_l125_m2_e1het
97.7431
99.0360
96.4836
78.3312
189031841890568965
9.4340
ckim-dragenSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.5714
2402400
ckim-dragenSNPtimap_l125_m2_e1homalt
99.5580
99.2669
99.8508
63.2612
1137484113791716
94.1176
ckim-dragenSNPtimap_l150_m0_e0*
97.7765
98.4353
97.1264
80.6352
7738123774022928
12.2271
ckim-dragenSNPtimap_l150_m0_e0het
96.9562
98.1165
95.8230
83.8541
500196500121818
8.2569
ckim-dragenSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.4286
30300
ckim-dragenSNPtimap_l150_m0_e0homalt
99.3100
99.0221
99.5996
68.7592
27342727361110
90.9091
ckim-dragenSNPtimap_l150_m1_e0*
98.2015
98.8636
97.5482
76.3868
194882241949549066
13.4694
ckim-dragenSNPtimap_l150_m1_e0het
97.4739
98.7146
96.2639
80.0619
122111591221347451
10.7595
ckim-dragenSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
80.7692
1501500
ckim-dragenSNPtimap_l150_m1_e0homalt
99.4455
99.1129
99.7803
65.1947
72626572671615
93.7500
ckim-dragenSNPtimap_l150_m2_e0*
98.2329
98.8933
97.5811
78.1929
202852272029250367
13.3201
ckim-dragenSNPtimap_l150_m2_e0het
97.5203
98.7579
96.3134
81.5763
127211601272348752
10.6776
ckim-dragenSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
83.1461
1501500
ckim-dragenSNPtimap_l150_m2_e0homalt
99.4533
99.1203
99.7886
67.8815
75496775541615
93.7500
ckim-dragenSNPtimap_l150_m2_e1*
98.2199
98.8901
97.5587
78.2933
204932302050051369
13.4503
ckim-dragenSNPtimap_l150_m2_e1het
97.5046
98.7630
96.2780
81.6768
128541611285649754
10.8652
ckim-dragenSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
83.1461
1501500
ckim-dragenSNPtimap_l150_m2_e1homalt
99.4457
99.1031
99.7907
67.9320
76246976291615
93.7500
ckim-dragenSNPtimap_l250_m0_e0*
96.5066
96.7883
96.2264
93.0796
1326441326524
7.6923
ckim-dragenSNPtimap_l250_m0_e0het
95.1974
95.5032
94.8936
94.2165
89242892481
2.0833
ckim-dragenSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-dragenSNPtimap_l250_m0_e0homalt
99.3135
99.5413
99.0868
87.9769
434243443
75.0000
ckim-dragenSNPtimap_l250_m1_e0*
97.2516
97.7288
96.7791
88.9718
4475104447714918
12.0805
ckim-dragenSNPtimap_l250_m1_e0het
96.2459
97.1361
95.3719
90.8281
288385288514010
7.1429
ckim-dragenSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.4894
40400
ckim-dragenSNPtimap_l250_m1_e0homalt
99.1261
98.8177
99.4364
82.0944
158819158898
88.8889
ckim-dragenSNPtimap_l250_m2_e0*
97.3484
97.8435
96.8583
89.6841
4900108490215919
11.9497
ckim-dragenSNPtimap_l250_m2_e0het
96.3935
97.2956
95.5080
91.3622
316688316814910
6.7114
ckim-dragenSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.5660
50500
ckim-dragenSNPtimap_l250_m2_e0homalt
99.1399
98.8565
99.4250
83.6036
1729201729109
90.0000