PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1402 1403 1404 1405 1406 1407 1408 1409 1410 ... 1720 1721 » 70251-70300 / 86044 show all
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2554	98.9184	99.5947	75.9330	6585	72	6635	27	13	48.1481
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2575	99.0562	99.4596	77.8403	4198	40	4233	23	9	39.1304
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	92.5926	2	0	2	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2515	98.6760	99.8336	71.5436	2385	32	2400	4	4	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9719	99.1684	98.7761	70.4653	30884	259	31073	385	49	12.7273
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.6551	99.1981	98.1180	73.7453	19422	157	19551	375	40	10.6667
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.2963	100.0000	92.8571	87.8261	12	0	13	1	1	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7111	99.6899	99.7323	69.3066	4822	15	4843	13	10	76.9231
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7312	99.8094	99.6531	71.4710	3142	6	3160	11	8	72.7273
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	93.7500	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6736	99.4668	99.8812	64.0938	1679	9	1682	2	2	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	*	82.7586	75.0000	92.3077	98.1690	12	4	12	1	1	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	het	77.7778	70.0000	87.5000	98.5102	7	3	7	1	1	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	90.9091	83.3333	100.0000	97.0930	5	1	5	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8565	99.9202	99.7929	46.2638	6263	5	6265	13	5	38.4615
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8403	99.9262	99.7545	48.2662	4062	3	4063	10	2	20.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	80.0000	2	0	2	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8865	99.9091	99.8638	42.0263	2199	2	2200	3	3	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7675	99.8416	99.6935	39.2563	10715	17	10732	33	4	12.1212
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6674	99.7924	99.5426	42.2165	6730	14	6747	31	2	6.4516
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9373	99.9248	99.9498	33.3890	3984	3	3984	2	2	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	95.4406	92.0792	99.0566	93.2954	93	8	105	1	0	0.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	94.5236	90.9091	98.4375	94.3662	60	6	63	1	0	0.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	90.5618	33	2	42	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8338	99.8720	99.7956	30.8168	3901	5	3905	8	4	50.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8389	99.9596	99.7185	33.2528	2477	1	2480	7	3	42.8571
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8598	99.7898	99.9299	26.0373	1424	3	1425	1	1	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	91.9192	8	0	8	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	91.6667	6	0	6	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	92.5926	2	0	2	0	0
ckim-dragen	SNP	ti	map_l100_m0_e0	*	98.3169	98.9803	97.6623	69.9393	21549	222	21557	516	60	11.6279
ckim-dragen	SNP	ti	map_l100_m0_e0	het	97.6691	98.8629	96.5038	74.2830	13824	159	13829	501	46	9.1816
ckim-dragen	SNP	ti	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	74.5455	14	0	14	0	0
ckim-dragen	SNP	ti	map_l100_m0_e0	homalt	99.4968	99.1896	99.8059	56.2121	7711	63	7714	15	14	93.3333
ckim-dragen	SNP	ti	map_l100_m1_e0	*	98.6835	99.2948	98.0797	66.8879	47593	338	47601	932	106	11.3734
ckim-dragen	SNP	ti	map_l100_m1_e0	het	98.1230	99.2485	97.0227	71.3768	29717	225	29720	912	87	9.5395
ckim-dragen	SNP	ti	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.0331	29	0	29	0	0
ckim-dragen	SNP	ti	map_l100_m1_e0	homalt	99.6288	99.3708	99.8881	54.6776	17847	113	17852	20	19	95.0000
ckim-dragen	SNP	ti	map_l100_m2_e0	*	98.6738	99.2954	98.0599	68.9474	48616	345	48624	962	107	11.1227
ckim-dragen	SNP	ti	map_l100_m2_e0	het	98.1149	99.2554	97.0004	73.1660	30394	228	30397	940	87	9.2553

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge