PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
69951-70000 / 86044 show all
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7436
97.0652
98.4317
54.5032
2159765321590344335
97.3837
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.1870
98.9876
99.3871
63.6368
83118582705143
84.3137
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3159
93.2216
99.6227
27.1443
761955476582929
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.6040
99.7536
95.5451
59.8944
5667145662264263
99.6212
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1519
97.5866
98.7237
61.6188
3065075830631396367
92.6768
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2085
99.0041
99.4137
68.4982
13620137135658052
65.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4901
93.6175
99.5447
31.6449
869859387454040
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.4677
98.0807
98.8578
41.0102
2406947124060278268
96.4029
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.4368
99.3178
99.5561
50.0867
1033671103174637
80.4348
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8949
94.4670
99.4508
25.3587
650538165193636
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.5338
99.7378
97.3585
36.6570
7228197224196195
99.4898
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
78.9679
72.4534
86.7698
52.5285
5051925057776
98.7013
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
87.5997
84.4444
91.0000
79.0356
114219198
88.8889
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
78.8827
65.3768
99.4220
27.6151
32117034422
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
67.6329
98.5915
51.4706
49.8155
701706666
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8383
99.8028
99.8737
55.5058
2530950253073217
53.1250
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8273
99.7901
99.8645
55.6157
147393114740205
25.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.1559
97.0803
99.2556
71.4387
3991240033
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9312
99.9116
54.3329
1017171016799
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
01000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.6797
99.5705
99.7890
51.2505
1182451118262520
80.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7691
99.7171
99.8211
53.8271
6697196696127
58.3333
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0896
98.3925
99.7967
32.3556
146924147333
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7545
99.7818
99.7273
51.7500
3658836571010
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
97.6637
96.7532
98.5915
61.0394
11924011901716
94.1176
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
97.6256
97.1429
98.1132
79.1104
3741136476
85.7143
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5768
95.8462
99.3711
22.4390
6232763244
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
97.9823
98.9848
97.0000
60.1594
195219466
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7914
99.7547
99.8281
43.5620
406710406573
42.8571
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.7593
99.7812
99.7374
46.7118
22805227962
33.3333
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5664
99.3506
99.7831
28.4161
459346011
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
41.9185
13282132600
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
95.3020
94.6667
95.9459
62.8141
7147132
66.6667
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
96.2963
100.0000
92.8571
86.5385
1301310
0.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
95.7447
91.8367
100.0000
21.0526
4544500
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
92.8571
100.0000
86.6667
60.5263
1301322
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD1_5map_l100_m0_e0*
96.8796
97.3349
96.4286
86.1120
84023837314
12.9032
ckim-dragenINDELD1_5map_l100_m0_e0het
96.3955
97.6311
95.1907
86.7502
57714574292
6.8966