PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69851-69900 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.2456 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 97.7273 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | * | 44.4444 | 50.0000 | 40.0000 | 98.5549 | 2 | 2 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 66.6667 | 40.0000 | 98.0989 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | * | 54.5455 | 60.0000 | 50.0000 | 98.5112 | 3 | 2 | 3 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 66.6667 | 40.0000 | 98.3607 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7952 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | * | 54.5455 | 60.0000 | 50.0000 | 98.5294 | 3 | 2 | 3 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 66.6667 | 40.0000 | 98.3819 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.8095 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_siren | * | 87.4390 | 93.0070 | 82.5000 | 95.1981 | 133 | 10 | 132 | 28 | 3 | 10.7143 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | het | 85.1126 | 94.8718 | 77.1739 | 96.1842 | 74 | 4 | 71 | 21 | 1 | 4.7619 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_siren | homalt | 89.1892 | 97.0588 | 82.5000 | 94.7368 | 33 | 1 | 33 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | * | 90.1639 | 94.8276 | 85.9375 | 97.1806 | 55 | 3 | 55 | 9 | 3 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | het | 92.1053 | 100.0000 | 85.3659 | 97.5405 | 37 | 0 | 35 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4959 | 6 | 3 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | segdup | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8750 | 12 | 0 | 12 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D1_5 | * | * | 99.4199 | 99.4105 | 99.4294 | 60.9956 | 145880 | 865 | 145840 | 837 | 396 | 47.3118 | |
| ckim-dragen | INDEL | D1_5 | * | het | 99.5957 | 99.7625 | 99.4294 | 59.4097 | 87366 | 208 | 87308 | 501 | 64 | 12.7745 | |
| ckim-dragen | INDEL | D1_5 | * | hetalt | 96.7193 | 94.0654 | 99.5273 | 61.7567 | 9637 | 608 | 9685 | 46 | 46 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | * | homalt | 99.6542 | 99.8998 | 99.4098 | 63.4062 | 48877 | 49 | 48847 | 290 | 286 | 98.6207 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | * | 99.5269 | 99.3917 | 99.6625 | 58.3864 | 32516 | 199 | 32478 | 110 | 86 | 78.1818 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | het | 99.7370 | 99.6292 | 99.8451 | 55.8027 | 20688 | 77 | 20632 | 32 | 11 | 34.3750 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | hetalt | 94.4661 | 92.3817 | 96.6468 | 71.8658 | 1249 | 103 | 1297 | 45 | 45 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | homalt | 99.7544 | 99.8207 | 99.6881 | 60.4958 | 10579 | 19 | 10549 | 33 | 30 | 90.9091 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | * | 95.8880 | 94.8263 | 96.9738 | 65.9095 | 11602 | 633 | 11600 | 362 | 359 | 99.1713 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | het | 98.0379 | 98.3796 | 97.6985 | 74.2557 | 1700 | 28 | 1698 | 40 | 38 | 95.0000 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | hetalt | 96.7587 | 94.0877 | 99.5857 | 56.9377 | 9612 | 604 | 9615 | 40 | 40 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | homalt | 66.9786 | 99.6564 | 50.4394 | 90.3836 | 290 | 1 | 287 | 282 | 281 | 99.6454 | |
| ckim-dragen | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9714 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9833 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6610 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9407 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | func_cds | * | 98.1481 | 100.0000 | 96.3636 | 44.8161 | 159 | 0 | 159 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | func_cds | het | 96.5909 | 100.0000 | 93.4066 | 52.8497 | 85 | 0 | 85 | 6 | 0 | 0.0000 | |