PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1372 1373 1374 1375 1376 1377 1378 1379 1380 ... 1720 1721 » 68751-68800 / 86044 show all
ckim-dragen	INDEL	D1_5	segdup	*	97.5135	99.6374	95.4783	95.4077	1099	4	1098	52	1	1.9231
ckim-dragen	INDEL	D1_5	segdup	het	96.2915	99.7110	93.0988	95.7597	690	2	688	51	0	0.0000
ckim-dragen	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.3039	50	2	51	0	0
ckim-dragen	INDEL	D1_5	segdup	homalt	99.8609	100.0000	99.7222	94.4853	359	0	359	1	1	100.0000
ckim-dragen	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9953	1	0	1	0	0
ckim-dragen	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9935	1	0	1	0	0
ckim-dragen	INDEL	D1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	INDEL	D1_5	tech_badpromoters	*	97.2973	94.7368	100.0000	43.7500	18	1	18	0	0
ckim-dragen	INDEL	D1_5	tech_badpromoters	het	93.3333	87.5000	100.0000	46.1538	7	1	7	0	0
ckim-dragen	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
ckim-dragen	INDEL	D1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	47.0588	9	0	9	0	0
ckim-dragen	INDEL	D6_15	*	*	97.9198	97.6928	98.1478	56.3201	25490	602	25488	481	433	90.0208
ckim-dragen	INDEL	D6_15	*	het	99.2490	99.4651	99.0338	63.3339	11530	62	11480	112	67	59.8214
ckim-dragen	INDEL	D6_15	*	hetalt	96.4645	93.5894	99.5217	32.8589	7650	524	7699	37	37	100.0000
ckim-dragen	INDEL	D6_15	*	homalt	97.3161	99.7471	95.0008	59.2976	6310	16	6309	332	329	99.0964
ckim-dragen	INDEL	D6_15	HG002complexvar	*	97.9831	97.6047	98.3644	58.6538	5175	127	5172	86	83	96.5116
ckim-dragen	INDEL	D6_15	HG002complexvar	het	99.2569	98.9103	99.6060	59.0976	3086	34	3034	12	10	83.3333
ckim-dragen	INDEL	D6_15	HG002complexvar	hetalt	93.7506	91.2142	96.4321	47.8822	924	89	973	36	36	100.0000
ckim-dragen	INDEL	D6_15	HG002complexvar	homalt	98.2293	99.6578	96.8412	63.9172	1165	4	1165	38	37	97.3684
ckim-dragen	INDEL	D6_15	HG002compoundhet	*	94.6830	94.0760	95.2979	36.3455	8496	535	8492	419	416	99.2840
ckim-dragen	INDEL	D6_15	HG002compoundhet	het	95.5765	97.8972	93.3633	64.0953	838	18	830	59	57	96.6102
ckim-dragen	INDEL	D6_15	HG002compoundhet	hetalt	96.5353	93.6572	99.5958	23.6915	7634	517	7638	31	31	100.0000
ckim-dragen	INDEL	D6_15	HG002compoundhet	homalt	12.7321	100.0000	6.7989	76.0353	24	0	24	329	328	99.6960
ckim-dragen	INDEL	D6_15	decoy	*	100.0000	100.0000	100.0000	99.9525	1	0	1	0	0
ckim-dragen	INDEL	D6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	INDEL	D6_15	decoy	hetalt	100.0000	100.0000	100.0000	99.0654	1	0	1	0	0
ckim-dragen	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	INDEL	D6_15	func_cds	*	98.8235	97.6744	100.0000	56.7010	42	1	42	0	0
ckim-dragen	INDEL	D6_15	func_cds	het	98.2456	96.5517	100.0000	54.8387	28	1	28	0	0
ckim-dragen	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
ckim-dragen	INDEL	D6_15	func_cds	homalt	100.0000	100.0000	100.0000	60.0000	12	0	12	0	0
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.0329	91.8045	94.2947	54.2066	3607	322	3603	218	214	98.1651
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	96.3915	97.1904	95.6056	75.0334	934	27	892	41	38	92.6829
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1933	87.6162	99.5285	30.2073	2073	293	2111	10	10	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	87.6552	99.6678	78.2269	51.0842	600	2	600	167	166	99.4012
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.2973	6	0	6	0	0
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.9730	3	0	3	0	0
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.4762	2	0	2	0	0
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	98.1132	1	0	1	0	0
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9422	97.7317	98.1536	61.1398	15683	364	15682	295	284	96.2712
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2667	99.3211	99.2123	71.8135	5559	38	5542	44	35	79.5455
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3919	95.3611	99.5111	32.7822	6496	316	6513	32	32	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.9398	99.7251	94.3058	66.7272	3628	10	3627	219	217	99.0868
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.0556	96.6386	97.4762	58.8481	17077	594	17071	442	432	97.7376
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8754	99.0250	98.7263	71.7769	5789	57	5736	74	67	90.5405
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4252	93.5104	99.5276	29.6399	7536	523	7584	36	36	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.5913	99.6283	91.8687	63.3516	3752	14	3751	332	329	99.0964
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.3133	97.6077	99.0291	77.5109	204	5	204	2	2	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2126	99.2126	99.2126	79.4830	126	1	126	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge