PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68601-68650 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5712 | 99.5238 | 99.6187 | 62.3069 | 1045 | 5 | 1045 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7868 | 99.5745 | 100.0000 | 69.2913 | 468 | 2 | 468 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5185 | 99.0415 | 100.0000 | 31.8681 | 310 | 3 | 310 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2565 | 100.0000 | 98.5240 | 66.2935 | 267 | 0 | 267 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8333 | 92.0000 | 100.0000 | 65.1515 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | * | 96.7796 | 97.0534 | 96.5074 | 85.5741 | 527 | 16 | 525 | 19 | 5 | 26.3158 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6989 | 95.7055 | 95.6923 | 87.6614 | 312 | 14 | 311 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.3333 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5657 | 99.5192 | 97.6303 | 79.2527 | 207 | 1 | 206 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | * | 97.1890 | 96.8633 | 97.5169 | 84.0762 | 1297 | 42 | 1296 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | het | 96.1240 | 95.7529 | 96.4981 | 85.9049 | 744 | 33 | 744 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 87.5758 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.8406 | 98.8417 | 98.8395 | 79.6936 | 512 | 6 | 511 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | * | 97.2488 | 96.9298 | 97.5700 | 85.3664 | 1326 | 42 | 1325 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | het | 96.2025 | 95.8386 | 96.5693 | 87.1089 | 760 | 33 | 760 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.4507 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.8690 | 98.8701 | 98.8679 | 81.2057 | 525 | 6 | 524 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3023 | 96.9892 | 97.6173 | 85.4425 | 1353 | 42 | 1352 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | het | 96.2825 | 95.9259 | 96.6418 | 87.1729 | 777 | 33 | 777 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 88.3657 | 42 | 3 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.8879 | 98.8889 | 98.8868 | 81.3172 | 534 | 6 | 533 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | * | 95.6449 | 95.8065 | 95.4839 | 89.2324 | 297 | 13 | 296 | 14 | 4 | 28.5714 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.3855 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.8204 | 99.1228 | 96.5517 | 84.2818 | 113 | 1 | 112 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | * | 96.6727 | 96.2651 | 97.0838 | 86.5742 | 799 | 31 | 799 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | het | 95.2424 | 94.6502 | 95.8420 | 88.2223 | 460 | 26 | 461 | 20 | 3 | 15.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 96.9697 | 94.1176 | 100.0000 | 92.8251 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7749 | 98.7768 | 98.7730 | 82.1174 | 323 | 4 | 322 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | * | 96.7213 | 96.3827 | 97.0623 | 87.8080 | 826 | 31 | 826 | 25 | 6 | 24.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2520 | 94.7686 | 95.7404 | 89.4183 | 471 | 26 | 472 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.8854 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | * | 96.7147 | 96.4368 | 96.9942 | 87.9173 | 839 | 31 | 839 | 26 | 6 | 23.0769 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | het | 95.2612 | 94.8819 | 95.6436 | 89.4550 | 482 | 26 | 483 | 22 | 3 | 13.6364 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.9412 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.8321 | 98.8338 | 98.8304 | 83.8298 | 339 | 4 | 338 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | * | 96.5632 | 96.0227 | 97.1098 | 92.4056 | 169 | 7 | 168 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6938 | 94.3396 | 97.0874 | 93.7764 | 100 | 6 | 100 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 100.0000 | 97.0588 | 87.9646 | 67 | 0 | 66 | 2 | 2 | 100.0000 | |