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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
67601-67650 / 86044 show all
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
93.3333
10100
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1837
96.7573
97.6138
51.8740
1333844713336326319
97.8528
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.3847
99.1729
95.6599
68.7214
3837323791172166
96.5116
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8156
94.2210
99.5572
26.7488
670141167453030
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7654
99.8573
95.7592
54.7998
280042800124123
99.1935
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1731
97.9516
98.3956
52.7295
1085522710855177173
97.7401
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.2901
99.5113
97.0984
68.6486
32581632469794
96.9072
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8298
96.1383
99.5819
26.2302
522821052402222
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7701
99.9578
97.6102
56.2071
2369123695857
98.2759
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3304
96.9158
97.7485
53.9045
1432945614327330320
96.9697
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6437
99.1903
96.1445
69.5777
4410364364175167
95.4286
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8070
94.2013
99.5609
27.3655
675841668023030
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0003
99.8736
96.1960
56.0166
316143161125123
98.4000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5160
97.0969
97.9388
58.0884
1715851317153361342
94.7368
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9393
99.0763
96.8281
71.9883
5792545739188172
91.4894
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8615
94.3541
99.5059
29.2939
760445576523838
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1861
99.8938
96.5358
60.0431
376243762135132
97.7778
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.8013
97.5893
98.0142
45.3295
92302289230187180
96.2567
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
97.9553
99.4146
96.5382
63.5394
27171627059791
93.8144
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4690
95.5993
99.4132
24.4623
456221045742727
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3615
99.8976
96.8719
41.6063
1951219516362
98.4127
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4055
83.0652
87.8815
45.0961
981200979135134
99.2593
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
72.4655
91.2162
60.1093
74.5125
135131107372
98.6301
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.2176
68718571022
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.6842
98.7578
72.6027
36.7052
15921596060
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.2481
99.2481
99.2481
82.9814
264226421
50.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.6785
100.0000
99.3590
85.1570
155015510
0.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.8904
94.5946
97.2222
60.8696
3523511
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.3810
7407400
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
94.7368
94.7368
94.7368
99.4664
5435430
0.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
92.8571
92.8571
92.8571
99.3463
3933930
0.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1788
90900
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8102
60600
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3201
99.0507
99.5909
51.8830
36523536521512
80.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.5462
99.4562
99.6364
61.3039
16469164463
50.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6785
97.8849
99.4850
27.6398
115725115966
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7650
99.8824
99.6479
51.2307
849184933
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
97.4718
96.8061
98.1467
52.3196
12734212712417
70.8333
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
97.2266
98.4848
96.0000
75.6006
3255312137
53.8462
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.2401
95.3342
99.2238
23.4653
7563776766
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
98.7147
100.0000
97.4619
47.3262
192019254
80.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5945
99.3642
99.8259
36.7938
171911172033
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.7151
99.5733
99.8573
47.3724
700370011
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.5915
577757800