PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67201-67250 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.4009 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8962 | 98.4190 | 95.4198 | 92.2035 | 498 | 8 | 500 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.4471 | 97.6589 | 93.3333 | 93.6299 | 292 | 7 | 294 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1087 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.4372 | 197 | 1 | 197 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.9726 | 98.4586 | 95.5307 | 92.9472 | 511 | 8 | 513 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8140 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.8462 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 97.0398 | 98.4934 | 95.6284 | 92.9688 | 523 | 8 | 525 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.6989 | 97.7918 | 93.6937 | 94.1905 | 310 | 7 | 312 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9009 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 81.2500 | 86.6667 | 76.4706 | 98.9875 | 13 | 2 | 13 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9880 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 93.5780 | 96.2264 | 91.0714 | 97.2098 | 102 | 4 | 102 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 97.9368 | 56 | 4 | 56 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8947 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.3696 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.9655 | 96.4602 | 91.5966 | 97.4551 | 109 | 4 | 109 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 91.1765 | 93.9394 | 88.5714 | 98.0474 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.1696 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 94.0171 | 96.4912 | 91.6667 | 97.5093 | 110 | 4 | 110 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 91.1765 | 93.9394 | 88.5714 | 98.1096 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.1759 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | * | 98.4771 | 98.8020 | 98.1543 | 83.2514 | 2969 | 36 | 2978 | 56 | 9 | 16.0714 | |
| ckim-gatk | INDEL | I1_5 | map_siren | het | 97.9415 | 98.8102 | 97.0879 | 85.2732 | 1661 | 20 | 1667 | 50 | 5 | 10.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_siren | homalt | 99.5056 | 99.5050 | 99.5062 | 78.6204 | 1206 | 6 | 1209 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | segdup | * | 98.0421 | 99.1501 | 96.9585 | 95.6110 | 1050 | 9 | 1052 | 33 | 2 | 6.0606 | |
| ckim-gatk | INDEL | I1_5 | segdup | het | 96.8319 | 99.2565 | 94.5230 | 96.6704 | 534 | 4 | 535 | 31 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.8106 | 45 | 3 | 46 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8593 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | * | * | 97.6383 | 96.8416 | 98.4482 | 52.9059 | 24039 | 784 | 24044 | 379 | 335 | 88.3905 | |
| ckim-gatk | INDEL | I6_15 | * | het | 98.9455 | 98.8239 | 99.0674 | 60.2345 | 9915 | 118 | 9879 | 93 | 52 | 55.9140 | |
| ckim-gatk | INDEL | I6_15 | * | hetalt | 95.9700 | 92.3167 | 99.9244 | 35.7056 | 7894 | 657 | 7935 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.8919 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | * | 98.1470 | 97.2454 | 99.0654 | 57.0085 | 4660 | 132 | 4664 | 44 | 43 | 97.7273 | |