PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65801-65850 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | * | 86.7257 | 84.4828 | 89.0909 | 92.1090 | 49 | 9 | 49 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | het | 86.4020 | 89.1892 | 83.7838 | 91.6290 | 33 | 4 | 31 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 95.7746 | 4 | 5 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 89.3805 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | * | * | 97.5429 | 96.3222 | 98.7949 | 47.4402 | 141348 | 5397 | 141168 | 1722 | 1190 | 69.1057 | |
| ckim-isaac | INDEL | D1_5 | * | het | 97.9869 | 97.6340 | 98.3423 | 46.0249 | 85502 | 2072 | 85013 | 1433 | 986 | 68.8067 | |
| ckim-isaac | INDEL | D1_5 | * | hetalt | 92.0397 | 86.6959 | 98.0855 | 45.9935 | 8882 | 1363 | 9222 | 180 | 168 | 93.3333 | |
| ckim-isaac | INDEL | D1_5 | * | homalt | 97.8426 | 95.9899 | 99.7683 | 50.1114 | 46964 | 1962 | 46933 | 109 | 36 | 33.0275 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | * | 94.1980 | 91.4993 | 97.0606 | 47.3235 | 29934 | 2781 | 29752 | 901 | 456 | 50.6104 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | het | 94.5641 | 92.7330 | 96.4689 | 45.1790 | 19256 | 1509 | 18687 | 684 | 323 | 47.2222 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | hetalt | 83.2980 | 76.1834 | 91.8782 | 58.9369 | 1030 | 322 | 1448 | 128 | 116 | 90.6250 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | homalt | 94.8892 | 91.0360 | 99.0830 | 48.9641 | 9648 | 950 | 9617 | 89 | 17 | 19.1011 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | * | 88.8135 | 85.9501 | 91.8743 | 43.5269 | 10516 | 1719 | 10436 | 923 | 829 | 89.8158 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | het | 68.7756 | 84.4907 | 57.9897 | 63.2088 | 1460 | 268 | 1125 | 815 | 730 | 89.5706 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | hetalt | 92.5735 | 86.7561 | 99.2273 | 35.2319 | 8863 | 1353 | 9117 | 71 | 65 | 91.5493 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | homalt | 74.1154 | 66.3230 | 83.9827 | 64.7328 | 193 | 98 | 194 | 37 | 34 | 91.8919 | |
| ckim-isaac | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9392 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9618 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6732 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9039 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | * | 99.3671 | 98.7421 | 100.0000 | 33.7553 | 157 | 2 | 157 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 42.5676 | 85 | 0 | 85 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 17.2414 | 72 | 2 | 72 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 84.2828 | 78.0622 | 91.5805 | 48.9211 | 3110 | 874 | 3100 | 285 | 235 | 82.4561 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.4407 | 85.5319 | 81.4493 | 59.0504 | 1206 | 204 | 1124 | 256 | 208 | 81.2500 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 83.2219 | 72.1186 | 98.3665 | 35.2346 | 1314 | 508 | 1385 | 23 | 22 | 95.6522 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.5378 | 78.4574 | 98.9950 | 44.8753 | 590 | 162 | 591 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 90.0000 | 81.8182 | 100.0000 | 99.2007 | 9 | 2 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.3392 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1481 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7805 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.4197 | 94.8503 | 98.0420 | 61.5230 | 61113 | 3318 | 60987 | 1218 | 972 | 79.8030 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.8145 | 96.7836 | 96.8455 | 61.4159 | 32167 | 1069 | 31775 | 1035 | 815 | 78.7440 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.3528 | 88.7263 | 98.4883 | 45.1727 | 8248 | 1048 | 8535 | 131 | 123 | 93.8931 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.0619 | 94.5157 | 99.7491 | 65.9214 | 20698 | 1201 | 20677 | 52 | 34 | 65.3846 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.6629 | 89.7351 | 95.7882 | 48.3290 | 28184 | 3224 | 28110 | 1236 | 977 | 79.0453 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.5242 | 92.9345 | 92.1175 | 55.9701 | 12785 | 972 | 12446 | 1065 | 828 | 77.7465 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 91.7362 | 85.8358 | 98.5078 | 31.2346 | 7975 | 1316 | 8252 | 125 | 116 | 92.8000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.7961 | 88.8038 | 99.3832 | 46.4455 | 7424 | 936 | 7412 | 46 | 33 | 71.7391 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 91.7822 | 88.7139 | 95.0704 | 56.7337 | 676 | 86 | 675 | 35 | 23 | 65.7143 | |