PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65151-65200 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0439 | 75.2066 | 72.9167 | 67.8332 | 728 | 240 | 630 | 234 | 184 | 78.6325 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.4745 | 65.1883 | 98.5629 | 35.0700 | 779 | 416 | 823 | 12 | 11 | 91.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 89.3587 | 81.9106 | 98.2968 | 40.7781 | 403 | 89 | 404 | 7 | 6 | 85.7143 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.2675 | 94.3265 | 98.2901 | 38.7683 | 6351 | 382 | 6323 | 110 | 70 | 63.6364 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.4258 | 95.4620 | 97.4092 | 41.9487 | 3492 | 166 | 3459 | 92 | 56 | 60.8696 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 94.7339 | 90.5742 | 99.2941 | 29.5191 | 836 | 87 | 844 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.6320 | 94.0056 | 99.4094 | 36.1609 | 2023 | 129 | 2020 | 12 | 9 | 75.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.9633 | 76.1261 | 88.7701 | 48.1994 | 169 | 53 | 166 | 21 | 16 | 76.1905 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.2913 | 80.0000 | 61.1111 | 70.0000 | 40 | 10 | 33 | 21 | 16 | 76.1905 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 84.2593 | 72.8000 | 100.0000 | 24.6032 | 91 | 34 | 95 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.4118 | 80.8511 | 100.0000 | 30.9091 | 38 | 9 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l100_m0_e0 | * | 78.2134 | 65.0032 | 98.1625 | 86.3822 | 1016 | 547 | 1015 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | het | 80.6462 | 68.5602 | 97.9050 | 88.4199 | 700 | 321 | 701 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | hetalt | 82.6291 | 72.7273 | 95.6522 | 89.6396 | 24 | 9 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | homalt | 72.6368 | 57.3674 | 98.9831 | 75.1684 | 292 | 217 | 292 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | * | 81.4370 | 69.4925 | 98.3399 | 83.2871 | 2492 | 1094 | 2488 | 42 | 20 | 47.6190 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | het | 83.9386 | 73.4228 | 97.9701 | 85.4069 | 1641 | 594 | 1641 | 34 | 14 | 41.1765 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | hetalt | 75.4294 | 62.0968 | 96.0526 | 85.1852 | 77 | 47 | 73 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | homalt | 77.1685 | 63.0807 | 99.3582 | 75.2463 | 774 | 453 | 774 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | * | 81.7339 | 69.9161 | 98.3594 | 84.3176 | 2582 | 1111 | 2578 | 43 | 21 | 48.8372 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | het | 84.2881 | 73.9489 | 97.9885 | 86.2255 | 1706 | 601 | 1705 | 35 | 15 | 42.8571 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | hetalt | 75.0774 | 61.6000 | 96.1039 | 86.5854 | 77 | 48 | 74 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | homalt | 77.3850 | 63.3624 | 99.3781 | 77.0744 | 799 | 462 | 799 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | * | 81.7169 | 69.9148 | 98.3127 | 84.3697 | 2626 | 1130 | 2622 | 45 | 21 | 46.6667 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | het | 84.2890 | 73.9650 | 97.9626 | 86.2811 | 1733 | 610 | 1731 | 36 | 15 | 41.6667 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | hetalt | 74.9736 | 61.3636 | 96.3415 | 86.1252 | 81 | 51 | 79 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | homalt | 77.3702 | 63.3880 | 99.2665 | 77.2272 | 812 | 469 | 812 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | * | 75.7650 | 61.6780 | 98.1917 | 90.2709 | 544 | 338 | 543 | 10 | 2 | 20.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | het | 78.6935 | 65.7581 | 97.9644 | 91.7001 | 386 | 201 | 385 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 95.6790 | 7 | 4 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m0_e0 | homalt | 69.1076 | 53.1690 | 98.6928 | 80.5591 | 151 | 133 | 151 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | * | 77.9687 | 64.4993 | 98.5486 | 87.4682 | 1359 | 748 | 1358 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | het | 80.3728 | 67.9401 | 98.3749 | 89.2349 | 907 | 428 | 908 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | homalt | 72.9473 | 57.6503 | 99.2941 | 79.6358 | 422 | 310 | 422 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | * | 78.3417 | 64.9818 | 98.6169 | 88.3010 | 1427 | 769 | 1426 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | het | 80.7469 | 68.4400 | 98.4504 | 89.8946 | 952 | 439 | 953 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | hetalt | 82.5149 | 73.8095 | 93.5484 | 92.2693 | 31 | 11 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | homalt | 73.3884 | 58.1913 | 99.3289 | 81.2185 | 444 | 319 | 444 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | * | 78.4183 | 65.0787 | 98.6367 | 88.3507 | 1448 | 777 | 1447 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | het | 80.8213 | 68.5369 | 98.4709 | 89.9312 | 965 | 443 | 966 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | hetalt | 81.4312 | 72.0930 | 93.5484 | 92.4939 | 31 | 12 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | homalt | 73.5557 | 58.3979 | 99.3407 | 81.3295 | 452 | 322 | 452 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | * | 72.7717 | 57.9767 | 97.7049 | 93.3158 | 298 | 216 | 298 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | het | 76.2961 | 62.7566 | 97.2851 | 94.2982 | 214 | 127 | 215 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.9925 | 5 | 4 | 4 | 0 | 0 | ||