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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
65101-65150 / 86044 show all
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
92.8267
87.4867
98.8609
64.0750
16502361649195
26.3158
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
92.8582
89.4839
96.4970
68.0383
3242381322311742
35.8974
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
93.0016
90.9261
95.1741
68.8082
194419419139735
36.0825
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
85.2572
77.2727
95.0820
73.0088
1023011664
66.6667
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
93.3273
88.3962
98.8411
66.0101
11961571194143
21.4286
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
80.2615
74.0424
87.6212
52.2423
450415794339613548
89.3964
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
76.9641
82.1855
72.3665
61.3081
17903881477564505
89.5390
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
81.5850
69.5556
98.6454
38.9545
189482920392823
82.1429
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
81.0708
69.3739
97.5118
50.5855
8203628232120
95.2381
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
50.0000
33.3333
100.0000
98.9011
12100
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.7179
11100
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.8245
87.6365
94.2532
40.4574
3321646863268719931737
87.1550
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.5315
93.3228
87.9023
49.1930
136419761270117481525
87.2426
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
90.7040
83.7402
98.9310
28.6610
11526223811938129114
88.3721
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.0211
84.5394
98.5791
36.6641
80491472804811698
84.4828
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
92.5554
89.9881
95.2735
38.7245
2878932032842214101207
85.6028
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.5569
94.9365
90.2936
47.5778
118876341125612101034
85.4545
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
92.5840
86.9698
98.9730
26.4574
96581447992610393
90.2913
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2388
86.5886
98.6779
34.8864
7244112272409780
82.4742
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.8083
87.4974
94.3796
47.9598
3791754183736322251830
82.2472
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
90.5655
92.3733
88.8270
56.6366
1646013591547919471601
82.2291
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
90.4880
83.4521
98.8195
30.8039
11710232212138145128
88.2759
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.2469
84.8746
98.6537
45.5252
974717379746133101
75.9398
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.4545
89.1929
89.7177
61.8267
2718632942596729762168
72.8495
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.1201
81.4606
98.3693
34.9531
13608309714116234204
87.1795
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.0850
84.6196
98.6202
51.6582
15372279415367215153
71.1628
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50*
92.1428
89.6098
94.8232
41.9297
3279038023234817661366
77.3499
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50het
91.9145
93.3439
90.5282
50.5104
1471110491400214651126
76.8601
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
91.6583
85.8616
98.2945
30.7003
899414819279161143
88.8199
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
92.7880
87.7185
98.4794
33.6241
90851272906714097
69.2857
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200*
73.3405
66.4921
81.7614
45.2275
13977041309292281
96.2329
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200het
58.1410
81.6327
45.1485
57.8816
40090228277270
97.4729
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
78.3824
64.7764
99.2239
34.3044
81144189574
57.1429
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
67.2694
51.8106
95.8763
44.7293
18617318687
87.5000
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.5480
97.7849
99.3232
55.6830
276346262758918894
50.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
98.6542
98.2774
99.0338
56.4448
161462831609315770
44.5860
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.5151
89.5327
95.7031
72.8238
479564902220
90.9091
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6735
97.4593
99.9183
53.0977
110092871100694
44.4444
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
63.5631
57.2581
71.4286
99.8537
7153652610
38.4615
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
61.4577
58.6207
64.5833
99.8482
513631175
29.4118
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
56.0000
43.7500
77.7778
99.2094
792164
66.6667
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
70.2703
61.9048
81.2500
99.9411
1381331
33.3333
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
93.4046
90.2930
96.7382
47.0617
17934192817795600351
58.5000
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
93.3376
91.6367
95.1028
49.5731
101799299943512284
55.4688
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
89.1293
81.6555
98.1092
39.4326
219049222834437
84.0909
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
95.2832
91.6502
99.2161
44.8245
556550755694430
68.1818
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
79.1674
71.9397
88.0095
54.7793
19107451857253201
79.4466