PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65001-65050 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.3420 | 79.4704 | 92.1504 | 48.6116 | 2551 | 659 | 2524 | 215 | 182 | 84.6512 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 76.5556 | 82.5342 | 71.3846 | 62.2751 | 723 | 153 | 464 | 186 | 158 | 84.9462 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.7895 | 79.0971 | 98.6283 | 41.6540 | 1279 | 338 | 1510 | 21 | 19 | 90.4762 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.1862 | 76.5690 | 98.5663 | 43.2350 | 549 | 168 | 550 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.6883 | 83.8593 | 94.1074 | 46.2864 | 1621 | 312 | 1613 | 101 | 76 | 75.2475 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.0120 | 84.6300 | 79.5511 | 62.0624 | 446 | 81 | 319 | 82 | 60 | 73.1707 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 91.1683 | 84.8517 | 98.5011 | 38.5122 | 801 | 143 | 920 | 14 | 14 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9417 | 80.9524 | 98.6807 | 38.3740 | 374 | 88 | 374 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 86.2084 | 80.6245 | 92.6232 | 55.4837 | 3279 | 788 | 3252 | 259 | 195 | 75.2896 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.2885 | 83.6842 | 79.0262 | 67.0065 | 1113 | 217 | 844 | 224 | 167 | 74.5536 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 87.3498 | 78.5324 | 98.3974 | 44.5432 | 1295 | 354 | 1535 | 25 | 23 | 92.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.4723 | 80.0551 | 98.8675 | 51.9325 | 871 | 217 | 873 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 84.9493 | 79.0158 | 91.8463 | 60.4412 | 3950 | 1049 | 3920 | 348 | 245 | 70.4023 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.5397 | 81.1435 | 79.9449 | 69.9648 | 1476 | 343 | 1160 | 291 | 202 | 69.4158 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.6169 | 76.2817 | 97.5556 | 48.0669 | 1473 | 458 | 1756 | 44 | 37 | 84.0909 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.4682 | 80.1441 | 98.7217 | 59.1894 | 1001 | 248 | 1004 | 13 | 6 | 46.1538 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.6722 | 83.5938 | 92.1690 | 57.0360 | 1498 | 294 | 1483 | 126 | 81 | 64.2857 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 80.0047 | 81.9376 | 78.1609 | 70.0413 | 499 | 110 | 340 | 95 | 57 | 60.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 90.7027 | 85.0765 | 97.1257 | 47.5173 | 667 | 117 | 811 | 24 | 20 | 83.3333 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.9729 | 83.2080 | 97.9351 | 51.7094 | 332 | 67 | 332 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4861 | 73.7415 | 86.2013 | 48.1481 | 542 | 193 | 531 | 85 | 81 | 95.2941 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.2300 | 84.6154 | 42.1053 | 63.3609 | 143 | 26 | 56 | 77 | 75 | 97.4026 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.4914 | 70.8428 | 98.7245 | 40.6959 | 311 | 128 | 387 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.7339 | 69.2913 | 96.7033 | 44.5122 | 88 | 39 | 88 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 85.9341 | 80.4598 | 92.2078 | 71.1610 | 70 | 17 | 71 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.9500 | 88.4615 | 91.4894 | 71.1656 | 46 | 6 | 43 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.2147 | 41.6667 | 81.8182 | 76.5957 | 5 | 7 | 9 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.4762 | 82.6087 | 100.0000 | 66.6667 | 19 | 4 | 19 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 56.7073 | 45.5882 | 75.0000 | 86.4865 | 31 | 37 | 30 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 51.8908 | 43.1818 | 65.0000 | 89.0710 | 19 | 25 | 13 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 59.5041 | 44.4444 | 90.0000 | 83.0508 | 4 | 5 | 9 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.0000 | 53.3333 | 80.0000 | 81.4815 | 8 | 7 | 8 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.6457 | 73.4098 | 91.9631 | 60.0526 | 704 | 255 | 698 | 61 | 38 | 62.2951 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.4772 | 76.5586 | 84.8185 | 64.9306 | 307 | 94 | 257 | 46 | 29 | 63.0435 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.4240 | 70.4268 | 96.4912 | 53.1250 | 231 | 97 | 275 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 82.7930 | 72.1739 | 97.0760 | 60.0467 | 166 | 64 | 166 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.7737 | 66.0714 | 88.8158 | 57.1831 | 407 | 209 | 405 | 51 | 47 | 92.1569 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.1120 | 71.9512 | 64.6617 | 69.6347 | 118 | 46 | 86 | 47 | 43 | 91.4894 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.7173 | 62.8571 | 98.4190 | 46.7368 | 220 | 130 | 249 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.7018 | 67.6471 | 100.0000 | 53.9474 | 69 | 33 | 70 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.2857 | 75.1592 | 95.9350 | 54.2751 | 118 | 39 | 118 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.7229 | 70.4918 | 89.1304 | 63.2000 | 43 | 18 | 41 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 84.0909 | 72.5490 | 100.0000 | 42.6471 | 37 | 14 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 91.5663 | 84.4444 | 100.0000 | 50.0000 | 38 | 7 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.3247 | 63.0435 | 93.5484 | 55.0725 | 29 | 17 | 29 | 2 | 2 | 100.0000 | |