PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64401-64450 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | * | 71.0742 | 55.1877 | 99.8043 | 69.9269 | 6117 | 4967 | 6119 | 12 | 3 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l100_m0_e0 | het | 74.7468 | 59.7757 | 99.7229 | 73.2042 | 4317 | 2905 | 4319 | 12 | 3 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | homalt | 63.5928 | 46.6199 | 100.0000 | 57.1053 | 1793 | 2053 | 1793 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m1_e0 | * | 75.3790 | 60.5730 | 99.7648 | 65.1235 | 14841 | 9660 | 14844 | 35 | 12 | 34.2857 | |
| ckim-isaac | SNP | tv | map_l100_m1_e0 | het | 78.9057 | 65.2916 | 99.6931 | 67.8118 | 10066 | 5351 | 10069 | 31 | 8 | 25.8065 | |
| ckim-isaac | SNP | tv | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 75.7895 | 23 | 18 | 23 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m1_e0 | homalt | 68.8845 | 52.5489 | 99.9579 | 57.4205 | 4752 | 4291 | 4752 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l100_m2_e0 | * | 75.7866 | 61.1033 | 99.7587 | 67.3111 | 15296 | 9737 | 15299 | 37 | 12 | 32.4324 | |
| ckim-isaac | SNP | tv | map_l100_m2_e0 | het | 79.2946 | 65.8300 | 99.6834 | 69.5147 | 10386 | 5391 | 10389 | 33 | 8 | 24.2424 | |
| ckim-isaac | SNP | tv | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e0 | homalt | 69.2951 | 53.0280 | 99.9591 | 61.2002 | 4886 | 4328 | 4886 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | * | 75.8227 | 61.1518 | 99.7549 | 67.3250 | 15461 | 9822 | 15464 | 38 | 12 | 31.5789 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | het | 79.3382 | 65.8928 | 99.6774 | 69.5352 | 10502 | 5436 | 10505 | 34 | 8 | 23.5294 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.2166 | 90.2898 | 98.5006 | 65.6575 | 25924 | 2788 | 26146 | 398 | 31 | 7.7889 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2997 | 91.1929 | 99.7939 | 58.4384 | 15480 | 1495 | 15495 | 32 | 23 | 71.8750 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.7405 | 88.7846 | 97.0653 | 58.2458 | 8605 | 1087 | 8798 | 266 | 144 | 54.1353 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.3980 | 87.5241 | 97.8468 | 61.7037 | 5458 | 778 | 5635 | 124 | 11 | 8.8710 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.1611 | 91.0564 | 99.6533 | 48.4903 | 3146 | 309 | 3162 | 11 | 5 | 45.4545 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 65.7143 | 54.7619 | 82.1429 | 95.6923 | 23 | 19 | 23 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.7778 | 48.1481 | 72.2222 | 96.3710 | 13 | 14 | 13 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.0495 | 96.4138 | 99.7416 | 53.4125 | 16561 | 616 | 16599 | 43 | 38 | 88.3721 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2106 | 96.5536 | 99.9255 | 53.9316 | 10702 | 382 | 10737 | 8 | 3 | 37.5000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.0159 | 96.1564 | 99.9488 | 52.1398 | 5854 | 234 | 5857 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0989 | 95.1988 | 99.0764 | 32.0722 | 17310 | 873 | 17379 | 162 | 93 | 57.4074 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.1980 | 95.1981 | 99.2838 | 34.4662 | 10884 | 549 | 10951 | 79 | 11 | 13.9241 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.4799 | 95.1964 | 99.8756 | 26.6788 | 6421 | 324 | 6423 | 8 | 7 | 87.5000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.8595 | 61.5385 | 64.2384 | 88.8643 | 88 | 55 | 97 | 54 | 16 | 29.6296 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.6716 | 66.6667 | 64.7059 | 89.5246 | 68 | 34 | 77 | 42 | 4 | 9.5238 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 63.4921 | 48.7805 | 90.9091 | 88.2353 | 20 | 21 | 20 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.8519 | 94.5071 | 99.3160 | 27.2218 | 6951 | 404 | 6970 | 48 | 31 | 64.5833 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.1923 | 94.8440 | 99.6599 | 28.7215 | 4378 | 238 | 4395 | 15 | 0 | 0.0000 | |