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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
64351-64400 / 86044 show all
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.8671
76.7932
89.9844
83.5648
1092330115012868
53.1250
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
81.8034
73.8226
91.7189
86.0200
674239731668
12.1212
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
89.8495
82.0513
99.2857
77.1491
4169141732
66.6667
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.6814
77.2332
91.3043
82.9887
97728810299859
60.2041
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
82.7292
74.3073
93.3042
85.8380
590204641468
17.3913
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.9538
82.0896
99.4845
75.5359
3858438622
100.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0742
88.4708
95.9835
76.8106
3668478372815682
52.5641
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.8799
87.4858
96.7387
79.1713
23143312373809
11.2500
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.6743
90.1869
99.6315
70.8673
1351147135253
60.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0520
90.0033
98.4822
69.9861
8220913830512813
10.1562
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2859
91.1304
99.8384
63.0944
4942481494485
62.5000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50*
92.3491
87.7265
97.4860
57.2867
4260596434311272
64.2857
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50het
92.2085
86.7552
98.3934
61.1512
26794092756458
17.7778
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
94.3567
89.4171
99.8741
46.5320
1580187158621
50.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200*
66.6667
57.6923
78.9474
94.6176
15111540
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200het
64.5161
58.8235
71.4286
94.8529
1071040
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
71.4286
55.5556
100.0000
92.8571
54500
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
97.9052
96.1507
99.7250
58.1999
10491420105182927
93.1034
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
98.1064
96.3243
99.9558
58.4821
6761258678631
33.3333
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
64.2857
50500
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8461
95.8323
99.9464
57.4072
3725162372722
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.4572
94.0150
99.0295
31.3640
700644670416948
69.5652
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
96.6143
93.9646
99.4178
33.0736
44062834440265
19.2308
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
28.5714
50500
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
96.9007
94.0899
99.8846
27.3413
2595163259633
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
66.1640
61.9048
71.0526
87.6623
261627115
45.4545
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
64.8148
55.5556
77.7778
89.0688
20162160
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
88.0000
60600
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50*
95.7008
92.5507
99.0729
30.3936
319325732063024
80.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50het
96.3741
93.2180
99.7514
32.0838
1993145200650
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
95.5795
91.5332
100.0000
25.9259
1200111120000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
96.2963
10100