PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63951-64000 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.8657 | 94.0053 | 99.9057 | 45.5875 | 2117 | 135 | 2119 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.6052 | 94.2754 | 99.0530 | 53.1678 | 3656 | 222 | 3661 | 35 | 17 | 48.5714 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.5210 | 93.9856 | 99.1970 | 53.9957 | 2344 | 150 | 2347 | 19 | 2 | 10.5263 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.2553 | 94.7939 | 99.8479 | 50.8778 | 1311 | 72 | 1313 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.1328 | 73.0570 | 77.3300 | 87.4921 | 282 | 104 | 307 | 90 | 26 | 28.8889 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 74.2078 | 71.3768 | 77.2727 | 87.9781 | 197 | 79 | 221 | 65 | 3 | 4.6154 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.6065 | 77.2727 | 93.4783 | 86.4507 | 85 | 25 | 86 | 6 | 4 | 66.6667 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 82.7602 | 77.8800 | 88.2929 | 83.1252 | 2116 | 601 | 2255 | 299 | 150 | 50.1672 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.6460 | 74.6599 | 90.0744 | 85.4526 | 1317 | 447 | 1452 | 160 | 15 | 9.3750 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.7251 | 83.8065 | 98.8889 | 77.1767 | 797 | 154 | 801 | 9 | 7 | 77.7778 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.9473 | 78.4628 | 90.2562 | 82.3482 | 1858 | 510 | 1973 | 213 | 125 | 58.6854 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.8565 | 74.9009 | 92.7029 | 85.1241 | 1134 | 380 | 1245 | 98 | 12 | 12.2449 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.5095 | 84.7418 | 99.4521 | 75.3295 | 722 | 130 | 726 | 4 | 4 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.1844 | 90.2139 | 96.3573 | 74.4602 | 9744 | 1057 | 9893 | 374 | 179 | 47.8610 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.9113 | 89.3360 | 96.7846 | 77.0025 | 6149 | 734 | 6291 | 209 | 19 | 9.0909 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5449 | 91.7497 | 99.6677 | 68.0131 | 3592 | 323 | 3599 | 12 | 9 | 75.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.3555 | 90.6219 | 98.4100 | 63.4241 | 41416 | 4286 | 41653 | 673 | 294 | 43.6850 | |
| ckim-isaac | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 48.3871 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 57.8947 | 9 | 1 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | * | * | 74.7295 | 62.4588 | 93.0005 | 54.4140 | 3983 | 2394 | 3986 | 300 | 193 | 64.3333 | |
| ckim-isaac | INDEL | I16_PLUS | * | het | 78.5832 | 69.8308 | 89.8441 | 60.3038 | 1898 | 820 | 1902 | 215 | 129 | 60.0000 | |
| ckim-isaac | INDEL | I16_PLUS | * | hetalt | 65.0682 | 48.5224 | 98.7366 | 42.1910 | 1018 | 1080 | 1016 | 13 | 11 | 84.6154 | |
| ckim-isaac | INDEL | I16_PLUS | * | homalt | 79.0390 | 68.3536 | 93.6842 | 50.1966 | 1067 | 494 | 1068 | 72 | 53 | 73.6111 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | * | 52.2963 | 39.2666 | 78.2675 | 62.9505 | 514 | 795 | 515 | 143 | 46 | 32.1678 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | het | 58.4929 | 47.6692 | 75.6757 | 61.6761 | 317 | 348 | 308 | 99 | 23 | 23.2323 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | hetalt | 38.7208 | 24.7761 | 88.5714 | 62.2302 | 83 | 252 | 93 | 12 | 10 | 83.3333 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | homalt | 50.1099 | 36.8932 | 78.0822 | 66.5138 | 114 | 195 | 114 | 32 | 13 | 40.6250 | |
| ckim-isaac | INDEL | I16_PLUS | HG002compoundhet | * | 61.2497 | 48.1568 | 84.1205 | 44.7593 | 1032 | 1111 | 1033 | 195 | 178 | 91.2821 | |
| ckim-isaac | INDEL | I16_PLUS | HG002compoundhet | het | 19.1083 | 31.9149 | 13.6364 | 72.1014 | 15 | 32 | 21 | 133 | 118 | 88.7218 | |
| ckim-isaac | INDEL | I16_PLUS | HG002compoundhet | hetalt | 65.1901 | 48.5428 | 99.2149 | 33.3115 | 1016 | 1077 | 1011 | 8 | 7 | 87.5000 | |
| ckim-isaac | INDEL | I16_PLUS | HG002compoundhet | homalt | 3.4483 | 33.3333 | 1.8182 | 61.5385 | 1 | 2 | 1 | 54 | 53 | 98.1481 | |
| ckim-isaac | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | func_cds | * | 85.7143 | 75.0000 | 100.0000 | 55.0000 | 9 | 3 | 9 | 0 | 0 | ||