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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
62601-62650 / 86044 show all
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8145
99.6296
100.0000
64.7757
269126700
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.6522
91.6667
100.0000
48.0000
1111300
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
47.2637
211021110
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.8371
94.5372
95.1389
64.3074
12467212336360
95.2381
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
91.4428
98.3425
85.4478
84.5800
35662293937
94.8718
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.7052
90.8178
98.9404
37.4482
6336474788
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
96.6165
99.2278
94.1392
60.2041
25722571615
93.7500
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7805
96.6355
96.9260
63.2253
310210830909893
94.8980
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9234
99.0868
91.0959
82.4814
86886656561
93.8462
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5196
93.9394
99.2455
33.2429
15199817101313
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4848
99.7211
97.2789
61.7387
71527152019
95.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0078
97.9824
98.0331
65.1766
18943918943836
94.7368
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.7712
99.6205
94.0803
83.0466
52524452826
92.8571
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8135
96.1864
99.4965
31.6116
9083698855
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3534
99.7835
98.9270
64.3185
461146155
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1645
97.0494
97.2799
70.1462
3947120393411098
89.0909
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.3121
98.9474
93.8136
84.0303
13161411077364
87.6712
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4603
93.8144
99.2597
35.4174
154710217431313
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7250
99.6324
97.8339
67.7720
1084410842421
87.5000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2658
97.2995
97.2323
75.7006
48641354848138105
76.0870
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.5189
98.9555
94.1994
86.2906
18001915599669
71.8750
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6910
99.5997
97.7987
75.1563
1244512442822
78.5714
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
97.9637
97.9911
97.9364
69.6975
17563617563731
83.7838
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
97.3574
99.5074
95.2984
84.1819
60635272622
84.6154
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.7528
96.0459
99.5215
32.8514
7533183244
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
98.8792
99.4987
98.2673
65.6463
397239775
71.4286
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.6522
92.5170
92.7878
58.2513
680556695250
96.1538
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
79.1209
100.0000
65.4545
84.4193
1690723837
97.3684
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
93.3540
87.6993
99.7881
34.6260
3855447111
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
94.7368
99.2126
90.6475
53.5117
12611261312
92.3077
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
98.3051
100.0000
96.6667
85.6688
8708730
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
97.9592
100.0000
96.0000
88.3178
5204820
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
55.5556
1201600
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8723
100.0000
95.8333
85.3659
2302310
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
97.0149
95.5882
98.4848
97.0014
6536510
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
95.3488
93.1818
97.6190
96.9979
4134110
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
93.1818
90900
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.7612
1501500
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.9022
98.6444
99.1614
72.9208
9461394686
75.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.2375
99.0025
99.4737
82.2678
397437821
50.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.1793
97.2561
99.1202
37.6600
319933833
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
99.3521
100.0000
98.7124
72.0288
230023032
66.6667
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
96.8147
96.5909
97.0395
67.8647
595215901816
88.8889
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
95.1278
98.7805
91.7355
88.1139
1622111108
80.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7378
94.8571
98.6945
34.1924
3321837855
100.0000