PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62551-62600 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | * | * | 97.9266 | 97.9363 | 97.9170 | 71.5505 | 6644 | 140 | 6628 | 141 | 105 | 74.4681 | |
| ckim-vqsr | INDEL | D16_PLUS | * | het | 97.9651 | 99.2719 | 96.6923 | 79.4267 | 3136 | 23 | 2894 | 99 | 69 | 69.6970 | |
| ckim-vqsr | INDEL | D16_PLUS | * | hetalt | 96.6957 | 94.2059 | 99.3207 | 38.1824 | 1821 | 112 | 2047 | 14 | 14 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | * | homalt | 99.0314 | 99.7045 | 98.3673 | 70.9863 | 1687 | 5 | 1687 | 28 | 22 | 78.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | * | 97.6423 | 97.5046 | 97.7805 | 66.9855 | 1602 | 41 | 1586 | 36 | 28 | 77.7778 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | het | 98.3872 | 98.7353 | 98.0415 | 69.0000 | 1093 | 14 | 851 | 17 | 10 | 58.8235 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.2896 | 89.8785 | 96.9697 | 47.4403 | 222 | 25 | 448 | 14 | 14 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 76.3371 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | * | 95.5217 | 95.2157 | 95.8298 | 35.3889 | 2229 | 112 | 2229 | 97 | 95 | 97.9381 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | het | 88.8043 | 99.2593 | 80.3419 | 59.7015 | 402 | 3 | 282 | 69 | 67 | 97.1014 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.8969 | 94.3465 | 99.5891 | 25.8850 | 1819 | 109 | 1939 | 8 | 8 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | homalt | 44.4444 | 100.0000 | 28.5714 | 72.5490 | 8 | 0 | 8 | 20 | 20 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.5807 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6572 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1304 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.4545 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6964 | 95.4417 | 95.9524 | 73.2314 | 2031 | 97 | 2015 | 85 | 77 | 90.5882 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.5214 | 97.8947 | 89.5221 | 87.3282 | 651 | 14 | 487 | 57 | 50 | 87.7193 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2725 | 91.6923 | 99.1437 | 39.7362 | 894 | 81 | 1042 | 9 | 9 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.8852 | 99.5902 | 96.2376 | 72.0686 | 486 | 2 | 486 | 19 | 18 | 94.7368 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5526 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8487 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1111 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3708 | 98.3432 | 98.3984 | 72.3852 | 3502 | 59 | 3502 | 57 | 45 | 78.9474 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1537 | 99.4096 | 96.9291 | 83.2983 | 1347 | 8 | 1231 | 39 | 30 | 76.9231 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8234 | 96.2133 | 99.4883 | 36.4312 | 1245 | 49 | 1361 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.5189 | 98.9555 | 94.1994 | 86.2906 | 1800 | 19 | 1559 | 96 | 69 | 71.8750 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3095 | 98.4375 | 98.1818 | 86.2989 | 378 | 6 | 378 | 7 | 2 | 28.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2480 | 97.5124 | 96.9849 | 88.9751 | 196 | 5 | 193 | 6 | 1 | 16.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1169 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7101 | 100.0000 | 99.4220 | 81.3578 | 172 | 0 | 172 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5418 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8445 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1071 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.6258 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 76.2758 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2973 | 94.7368 | 100.0000 | 70.6667 | 18 | 1 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9592 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6954 | 99.5943 | 99.7967 | 58.4810 | 491 | 2 | 491 | 1 | 0 | 0.0000 | |