PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6201-6250 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.8621 | 75.0000 | 76.7442 | 59.4340 | 6 | 2 | 33 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 20 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 88.0000 | 84.6154 | 91.6667 | 47.8261 | 11 | 2 | 11 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 35.7447 | 85.7143 | 22.5806 | 94.7487 | 24 | 4 | 21 | 72 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 34.7826 | 80.0000 | 22.2222 | 97.4755 | 4 | 1 | 4 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 36.3200 | 81.6092 | 23.3577 | 88.6542 | 71 | 16 | 64 | 210 | 1 | 0.4762 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 38.9095 | 89.1304 | 24.8869 | 85.7327 | 41 | 5 | 55 | 166 | 1 | 0.6024 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 73.0769 | 0.0000 | 0.0000 | 19 | 7 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 27.5766 | 73.3333 | 16.9811 | 93.8799 | 11 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 36.0728 | 82.2222 | 23.1047 | 89.1924 | 74 | 16 | 64 | 213 | 1 | 0.4695 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 38.5430 | 89.5833 | 24.5536 | 86.4897 | 43 | 5 | 55 | 169 | 1 | 0.5917 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 73.0769 | 0.0000 | 0.0000 | 19 | 7 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1436 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 36.6856 | 81.4433 | 23.6749 | 89.0986 | 79 | 18 | 67 | 216 | 1 | 0.4630 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 39.4150 | 90.1961 | 25.2174 | 86.3339 | 46 | 5 | 58 | 172 | 1 | 0.5814 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 70.0000 | 0.0000 | 0.0000 | 21 | 9 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1950 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 60.6061 | 100.0000 | 43.4783 | 97.1357 | 9 | 0 | 10 | 13 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 54.5455 | 100.0000 | 37.5000 | 98.6395 | 2 | 0 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 53.2117 | 92.5926 | 37.3333 | 95.7069 | 25 | 2 | 28 | 47 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 54.1353 | 90.0000 | 38.7097 | 94.2056 | 18 | 2 | 24 | 38 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.0798 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 51.7369 | 92.5926 | 35.8974 | 95.7470 | 25 | 2 | 28 | 50 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 52.3636 | 90.0000 | 36.9231 | 94.2376 | 18 | 2 | 24 | 41 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.1586 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 51.5647 | 89.2857 | 36.2500 | 95.6873 | 25 | 3 | 29 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 52.7550 | 90.0000 | 37.3134 | 94.1434 | 18 | 2 | 25 | 42 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.1716 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 60.0000 | 100.0000 | 42.8571 | 98.8553 | 7 | 0 | 6 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 71.4286 | 100.0000 | 55.5556 | 98.6861 | 7 | 0 | 5 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.0706 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | * | 84.6327 | 75.3158 | 96.5801 | 84.0828 | 8348 | 2736 | 8331 | 295 | 249 | 84.4068 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | het | 85.0006 | 76.5993 | 95.4718 | 87.4215 | 5532 | 1690 | 5524 | 262 | 216 | 82.4427 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | homalt | 83.9304 | 72.9329 | 98.8335 | 64.8615 | 2805 | 1041 | 2796 | 33 | 33 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | * | 88.0506 | 79.8294 | 98.1596 | 77.4096 | 19559 | 4942 | 19521 | 366 | 304 | 83.0601 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | het | 88.3933 | 80.7745 | 97.5991 | 81.8251 | 12453 | 2964 | 12439 | 306 | 244 | 79.7386 | |