PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61601-61650 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9598 | 98.5931 | 99.3293 | 80.6409 | 14366 | 205 | 14366 | 97 | 14 | 14.4330 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1639 | 98.4142 | 99.9251 | 72.5328 | 5337 | 86 | 5337 | 4 | 4 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6806 | 99.6087 | 99.7525 | 66.7490 | 4837 | 19 | 4837 | 12 | 10 | 83.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6600 | 99.6762 | 99.6439 | 69.2790 | 3078 | 10 | 3078 | 11 | 9 | 81.8182 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7164 | 99.4907 | 99.9431 | 60.9458 | 1758 | 9 | 1758 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 97.0361 | 23 | 3 | 23 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3226 | 82.3529 | 100.0000 | 97.5779 | 14 | 3 | 14 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4082 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5445 | 99.1568 | 99.9353 | 61.6132 | 10819 | 92 | 10815 | 7 | 5 | 71.4286 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6571 | 99.3874 | 99.9283 | 62.5798 | 6976 | 43 | 6972 | 5 | 3 | 60.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.3400 | 98.7394 | 99.9479 | 59.7020 | 3838 | 49 | 3838 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6992 | 99.3022 | 98.1034 | 41.3093 | 7400 | 52 | 7397 | 143 | 1 | 0.6993 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2513 | 99.5095 | 97.0246 | 43.7566 | 4666 | 23 | 4663 | 143 | 1 | 0.6993 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4715 | 98.9485 | 100.0000 | 36.3424 | 2729 | 29 | 2729 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.7746 | 94.4444 | 97.1429 | 88.4488 | 34 | 2 | 34 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7534 | 99.6812 | 99.8257 | 39.7409 | 3439 | 11 | 3436 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8363 | 99.9532 | 99.7196 | 42.4576 | 2137 | 1 | 2134 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6556 | 99.3135 | 100.0000 | 34.6057 | 1302 | 9 | 1302 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | * | 69.0592 | 53.2118 | 98.3492 | 88.9281 | 5898 | 5186 | 5898 | 99 | 1 | 1.0101 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | het | 79.8556 | 67.3775 | 98.0060 | 89.3473 | 4866 | 2356 | 4866 | 99 | 1 | 1.0101 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | homalt | 42.2477 | 26.7811 | 100.0000 | 86.1726 | 1030 | 2816 | 1030 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | * | 74.6989 | 60.0098 | 98.9100 | 84.8150 | 14703 | 9798 | 14700 | 162 | 1 | 0.6173 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | het | 84.0404 | 73.2308 | 98.5936 | 85.7766 | 11290 | 4127 | 11287 | 161 | 1 | 0.6211 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | homalt | 54.6448 | 37.5981 | 99.9706 | 80.1633 | 3400 | 5643 | 3400 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | * | 75.1758 | 60.6200 | 98.9306 | 85.6823 | 15175 | 9858 | 15172 | 164 | 1 | 0.6098 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | het | 84.3040 | 73.6198 | 98.6157 | 86.5798 | 11615 | 4162 | 11612 | 163 | 1 | 0.6135 | |