PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
61551-61600 / 86044 show all
ckim-vqsrSNP*segdupwithalthetalt
0.0000
100.0000
00000
ckim-vqsrSNP*segdupwithalthomalt
0.0000
100.0000
00000
ckim-vqsrSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.0196
154315422
100.0000
ckim-vqsrSNP*tech_badpromotershet
98.6842
97.4026
100.0000
50.9804
7527500
ckim-vqsrSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
ckim-vqsrSNPti**
99.3455
98.7474
99.9510
21.8102
2059387261242059330100989
8.8206
ckim-vqsrSNPti*het
99.5238
99.1280
99.9229
24.8520
127071311178127066598162
6.3201
ckim-vqsrSNPti*hetalt
97.3638
95.1890
99.6403
53.2773
5542855422
100.0000
ckim-vqsrSNPti*homalt
99.0608
98.1423
99.9967
16.3042
788120149187881112625
96.1538
ckim-vqsrSNPtiHG002complexvar*
98.8535
97.7474
99.9849
18.1351
496983114534969257538
50.6667
ckim-vqsrSNPtiHG002complexvarhet
99.1493
98.3302
99.9822
17.7224
30951052563094625518
32.7273
ckim-vqsrSNPtiHG002complexvarhetalt
96.2406
92.7536
100.0000
40.3727
1921519200
ckim-vqsrSNPtiHG002complexvarhomalt
98.3712
96.8046
99.9893
18.7775
18728161821872712020
100.0000
ckim-vqsrSNPtiHG002compoundhet*
98.9109
97.9517
99.8891
36.4634
17120358171201917
89.4737
ckim-vqsrSNPtiHG002compoundhethet
99.2006
98.5692
99.8402
40.6564
936913693691513
86.6667
ckim-vqsrSNPtiHG002compoundhethetalt
97.5221
95.1641
100.0000
22.7209
5512855100
ckim-vqsrSNPtiHG002compoundhethomalt
98.6436
97.3763
99.9445
31.0556
7200194720044
100.0000
ckim-vqsrSNPtidecoy*
0.0000
100.0000
00000
ckim-vqsrSNPtidecoyhet
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7241
99.7700
99.6783
64.5024
21695216970
0.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6400
99.7837
99.4968
65.7726
13843138470
0.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8726
99.7455
100.0000
61.9602
784278400
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6878
99.7917
99.5842
69.2913
14373143760
0.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6181
99.8906
99.3471
70.2781
913191360
0.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8092
99.6190
100.0000
67.3737
523252300
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
96.9512
96.3636
97.5460
90.9595
159615942
50.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.3563
95.9677
96.7480
90.6535
119511942
50.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.7355
4014000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.1899
99.0155
99.3649
88.4872
140814140898
88.8889
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.0685
99.0142
99.1228
89.4371
904990487
87.5000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3666
99.2095
99.5242
88.1418
125510125566
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3069
99.2443
99.3695
89.2982
788678855
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.4602
465446511
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4081
99.2523
99.5645
82.9173
4115314115188
44.4444
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2430
99.1304
99.3558
84.2935
2622232622177
41.1765
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
30300
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6989
99.4660
99.9329
79.6894
14908149011
100.0000