PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61301-61350 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.6908 | 99.5935 | 97.8044 | 62.6398 | 490 | 2 | 490 | 11 | 9 | 81.8182 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5458 | 99.2722 | 99.8208 | 49.8653 | 6684 | 49 | 6686 | 12 | 7 | 58.3333 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6165 | 99.4259 | 99.8079 | 54.6157 | 3637 | 21 | 3636 | 7 | 2 | 28.5714 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.4617 | 97.0748 | 99.8889 | 26.7101 | 896 | 27 | 899 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8839 | 99.9535 | 99.8144 | 47.5030 | 2151 | 1 | 2151 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.3583 | 95.9459 | 96.7742 | 64.4262 | 213 | 9 | 210 | 7 | 4 | 57.1429 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.2687 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 26.9461 | 120 | 5 | 122 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.6296 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | * | 96.7114 | 96.8650 | 96.5583 | 90.6490 | 1514 | 49 | 1515 | 54 | 7 | 12.9630 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | het | 95.8049 | 96.1802 | 95.4325 | 92.0387 | 982 | 39 | 982 | 47 | 3 | 6.3830 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | homalt | 98.8235 | 99.0177 | 98.6301 | 85.4747 | 504 | 5 | 504 | 7 | 4 | 57.1429 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | * | 97.1981 | 96.6815 | 97.7202 | 88.7691 | 3467 | 119 | 3472 | 81 | 16 | 19.7531 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | het | 96.2709 | 95.7942 | 96.7524 | 90.3659 | 2141 | 94 | 2145 | 72 | 11 | 15.2778 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | homalt | 99.2254 | 99.1850 | 99.2659 | 84.2639 | 1217 | 10 | 1217 | 9 | 5 | 55.5556 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | * | 97.1833 | 96.6423 | 97.7304 | 89.4395 | 3569 | 124 | 3574 | 83 | 16 | 19.2771 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | het | 96.2758 | 95.7521 | 96.8053 | 90.9383 | 2209 | 98 | 2212 | 73 | 11 | 15.0685 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | hetalt | 93.1624 | 87.2000 | 100.0000 | 87.7076 | 109 | 16 | 111 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | homalt | 99.2070 | 99.2070 | 99.2070 | 85.1821 | 1251 | 10 | 1251 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | * | 97.1482 | 96.5389 | 97.7652 | 89.4752 | 3626 | 130 | 3631 | 83 | 16 | 19.2771 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | het | 96.2442 | 95.6466 | 96.8494 | 90.9830 | 2241 | 102 | 2244 | 73 | 11 | 15.0685 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | hetalt | 92.6829 | 86.3636 | 100.0000 | 87.5536 | 114 | 18 | 116 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | homalt | 99.2194 | 99.2194 | 99.2194 | 85.2079 | 1271 | 10 | 1271 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | * | 96.5169 | 97.3923 | 95.6570 | 93.0361 | 859 | 23 | 859 | 39 | 4 | 10.2564 | |
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | het | 95.3743 | 96.5928 | 94.1860 | 94.0596 | 567 | 20 | 567 | 35 | 1 | 2.8571 | |
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | homalt | 98.9474 | 99.2958 | 98.6014 | 88.7224 | 282 | 2 | 282 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | * | 96.8785 | 96.4404 | 97.3206 | 91.1117 | 2032 | 75 | 2034 | 56 | 8 | 14.2857 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | het | 95.6747 | 95.2060 | 96.1480 | 92.4743 | 1271 | 64 | 1273 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | homalt | 99.2481 | 99.1803 | 99.3160 | 86.5054 | 726 | 6 | 726 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | * | 96.8419 | 96.3115 | 97.3781 | 91.7140 | 2115 | 81 | 2117 | 57 | 8 | 14.0351 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | het | 95.6234 | 94.9676 | 96.2882 | 93.0044 | 1321 | 70 | 1323 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | homalt | 99.2136 | 99.2136 | 99.2136 | 87.3235 | 757 | 6 | 757 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | * | 96.8133 | 96.2247 | 97.4091 | 91.7742 | 2141 | 84 | 2143 | 57 | 8 | 14.0351 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | het | 95.6019 | 94.8864 | 96.3283 | 93.0623 | 1336 | 72 | 1338 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | homalt | 99.2248 | 99.2248 | 99.2248 | 87.3859 | 768 | 6 | 768 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | * | 95.5110 | 97.2763 | 93.8086 | 94.9219 | 500 | 14 | 500 | 33 | 2 | 6.0606 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | het | 93.8659 | 96.4809 | 91.3889 | 95.6752 | 329 | 12 | 329 | 31 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | homalt | 99.0881 | 99.3902 | 98.7879 | 91.7376 | 163 | 1 | 163 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | * | 96.2213 | 96.0389 | 96.4045 | 93.0291 | 1285 | 53 | 1287 | 48 | 6 | 12.5000 | |