PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60851-60900 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 98.0498 | 97.4110 | 98.6971 | 91.7517 | 301 | 8 | 303 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9459 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.5634 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4930 | 98.3051 | 98.6817 | 90.9679 | 522 | 9 | 524 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 98.0992 | 97.4763 | 98.7302 | 91.7883 | 309 | 8 | 311 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6140 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.6501 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 91.3043 | 87.5000 | 95.4545 | 98.3321 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7302 | 12 | 3 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9231 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.6938 | 94.3396 | 97.0874 | 96.3358 | 100 | 6 | 100 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.8276 | 91.6667 | 98.2143 | 97.0727 | 55 | 5 | 55 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.3396 | 43 | 1 | 43 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 95.9641 | 94.6903 | 97.2727 | 96.6616 | 107 | 6 | 107 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3125 | 92.4242 | 98.3871 | 97.2222 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4496 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0749 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0000 | 94.7368 | 97.2973 | 96.7401 | 108 | 6 | 108 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3125 | 92.4242 | 98.3871 | 97.3195 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4733 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.1093 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | * | 99.2843 | 99.1348 | 99.4343 | 81.3909 | 2979 | 26 | 2988 | 17 | 5 | 29.4118 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | het | 99.0766 | 98.8102 | 99.3445 | 82.4495 | 1661 | 20 | 1667 | 11 | 1 | 9.0909 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.4713 | 109 | 3 | 109 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_siren | homalt | 99.6298 | 99.7525 | 99.5074 | 78.6951 | 1209 | 3 | 1212 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | segdup | * | 99.2921 | 99.2446 | 99.3396 | 94.6513 | 1051 | 8 | 1053 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | segdup | het | 99.1652 | 99.2565 | 99.0741 | 95.4899 | 534 | 4 | 535 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0963 | 46 | 2 | 47 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8776 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | * | * | 97.9082 | 97.2888 | 98.5355 | 53.2809 | 24150 | 673 | 24155 | 359 | 329 | 91.6435 | |
| dgrover-gatk | INDEL | I6_15 | * | het | 99.0704 | 98.9435 | 99.1977 | 59.7099 | 9927 | 106 | 9891 | 80 | 53 | 66.2500 | |
| dgrover-gatk | INDEL | I6_15 | * | hetalt | 96.6039 | 93.4744 | 99.9502 | 38.7907 | 7993 | 558 | 8034 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | * | homalt | 97.7715 | 99.8557 | 95.7725 | 55.4177 | 6230 | 9 | 6230 | 275 | 272 | 98.9091 | |
| dgrover-gatk | INDEL | I6_15 | HG002complexvar | * | 98.6793 | 98.2053 | 99.1579 | 57.8639 | 4706 | 86 | 4710 | 40 | 39 | 97.5000 | |
| dgrover-gatk | INDEL | I6_15 | HG002complexvar | het | 99.4230 | 99.0658 | 99.7827 | 59.6952 | 2333 | 22 | 2296 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | I6_15 | HG002complexvar | hetalt | 97.3563 | 94.8487 | 100.0000 | 56.1679 | 1160 | 63 | 1201 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.5378 | 99.9176 | 97.1955 | 55.8074 | 1213 | 1 | 1213 | 35 | 35 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | * | 94.9104 | 93.5962 | 96.2620 | 37.4707 | 8214 | 562 | 8215 | 319 | 317 | 99.3730 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | het | 86.2668 | 98.0769 | 76.9953 | 84.5091 | 204 | 4 | 164 | 49 | 48 | 97.9592 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | hetalt | 96.6156 | 93.4637 | 99.9875 | 29.8618 | 7979 | 558 | 8020 | 1 | 1 | 100.0000 | |