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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1209 1210 1211 1212 1213 1214 1215 1216 1217 ... 1720 1721 » 60601-60650 / 86044 show all
dgrover-gatk	SNP	*	map_l250_m2_e0	*	98.4387	98.3513	98.5262	90.2982	7755	130	7755	116	30	25.8621
dgrover-gatk	SNP	*	map_l250_m2_e0	het	98.1270	98.3442	97.9107	91.4879	5108	86	5108	109	25	22.9358
dgrover-gatk	SNP	*	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	90.0000	5	0	5	0	0
dgrover-gatk	SNP	*	map_l250_m2_e0	homalt	99.0440	98.3619	99.7357	86.6145	2642	44	2642	7	5	71.4286
dgrover-gatk	SNP	*	map_l250_m2_e1	*	98.4461	98.3598	98.5325	90.3561	7856	131	7856	117	30	25.6410
dgrover-gatk	SNP	*	map_l250_m2_e1	het	98.1329	98.3473	97.9194	91.5436	5177	87	5177	110	25	22.7273
dgrover-gatk	SNP	*	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	90.0000	5	0	5	0	0
dgrover-gatk	SNP	*	map_l250_m2_e1	homalt	99.0554	98.3812	99.7389	86.6637	2674	44	2674	7	5	71.4286
dgrover-gatk	SNP	*	map_siren	*	99.6607	99.6410	99.6805	56.6949	145703	525	145680	467	103	22.0557
dgrover-gatk	SNP	*	map_siren	het	99.5699	99.6197	99.5201	59.7603	90645	346	90631	437	77	17.6201
dgrover-gatk	SNP	*	map_siren	hetalt	98.7500	97.5309	100.0000	70.3008	79	2	79	0	0
dgrover-gatk	SNP	*	map_siren	homalt	99.8121	99.6791	99.9455	50.4067	54979	177	54970	30	26	86.6667
dgrover-gatk	SNP	*	segdup	*	99.6727	99.8397	99.5063	90.5121	28022	45	28016	139	12	8.6331
dgrover-gatk	SNP	*	segdup	het	99.5334	99.8152	99.2533	91.5277	17285	32	17279	130	3	2.3077
dgrover-gatk	SNP	*	segdup	hetalt	100.0000	100.0000	100.0000	96.8750	7	0	7	0	0
dgrover-gatk	SNP	*	segdup	homalt	99.8976	99.8790	99.9162	88.2042	10730	13	10730	9	9	100.0000
dgrover-gatk	SNP	*	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	*	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	*	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	*	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	*	tech_badpromoters	*	98.4026	98.0892	98.7179	49.6774	154	3	154	2	2	100.0000
dgrover-gatk	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	51.9231	75	2	75	0	0
dgrover-gatk	SNP	*	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	SNP	*	tech_badpromoters	homalt	98.1366	98.7500	97.5309	47.4026	79	1	79	2	2	100.0000
dgrover-gatk	SNP	ti	*	*	99.9570	99.9639	99.9500	17.7617	2084759	752	2084696	1042	126	12.0921
dgrover-gatk	SNP	ti	*	het	99.9394	99.9568	99.9221	18.8587	1281337	554	1281283	999	87	8.7087
dgrover-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	41.2361	580	2	580	0	0
dgrover-gatk	SNP	ti	*	homalt	99.9851	99.9756	99.9946	15.9219	802842	196	802833	43	39	90.6977
dgrover-gatk	SNP	ti	HG002complexvar	*	99.9530	99.9268	99.9791	17.5262	508064	372	508000	106	56	52.8302
dgrover-gatk	SNP	ti	HG002complexvar	het	99.9452	99.9164	99.9739	17.0118	314503	263	314449	82	32	39.0244
dgrover-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.9375	205	2	205	0	0
dgrover-gatk	SNP	ti	HG002complexvar	homalt	99.9661	99.9447	99.9876	18.3249	193356	107	193346	24	24	100.0000
dgrover-gatk	SNP	ti	HG002compoundhet	*	99.8369	99.8284	99.8455	35.6925	17448	30	17446	27	21	77.7778
dgrover-gatk	SNP	ti	HG002compoundhet	het	99.7790	99.7685	99.7895	39.8442	9483	22	9481	20	14	70.0000
dgrover-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.2372	577	2	577	0	0
dgrover-gatk	SNP	ti	HG002compoundhet	homalt	99.9121	99.9189	99.9053	30.4654	7388	6	7388	7	7	100.0000
dgrover-gatk	SNP	ti	decoy	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	decoy	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	decoy	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	func_cds	*	99.9347	99.9565	99.9130	23.1014	13781	6	13779	12	0	0.0000
dgrover-gatk	SNP	ti	func_cds	het	99.9118	99.9647	99.8590	25.0066	8501	3	8499	12	0	0.0000
dgrover-gatk	SNP	ti	func_cds	hetalt	100.0000	100.0000	100.0000	50.0000	8	0	8	0	0
dgrover-gatk	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1978	98.9840	99.4125	65.8284	3215	33	3215	19	7	36.8421
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9859	98.8636	99.1085	68.8570	2001	23	2001	18	6	33.3333
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.2008	1214	10	1214	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0

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