PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
60551-60600 / 86044 show all | |||||||||||||||
dgrover-gatk | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.7105 | 99.5001 | 99.9219 | 58.2002 | 26868 | 135 | 26868 | 21 | 16 | 76.1905 | |
dgrover-gatk | SNP | * | map_l100_m2_e0 | * | 99.4963 | 99.4795 | 99.5130 | 68.3628 | 73579 | 385 | 73568 | 360 | 79 | 21.9444 | |
dgrover-gatk | SNP | * | map_l100_m2_e0 | het | 99.3701 | 99.4698 | 99.2707 | 71.6313 | 46153 | 246 | 46142 | 339 | 63 | 18.5841 | |
dgrover-gatk | SNP | * | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 73.7179 | 41 | 1 | 41 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l100_m2_e0 | homalt | 99.7105 | 99.4986 | 99.9234 | 60.6643 | 27385 | 138 | 27385 | 21 | 16 | 76.1905 | |
dgrover-gatk | SNP | * | map_l100_m2_e1 | * | 99.4995 | 99.4835 | 99.5154 | 68.3658 | 74351 | 386 | 74340 | 362 | 79 | 21.8232 | |
dgrover-gatk | SNP | * | map_l100_m2_e1 | het | 99.3747 | 99.4755 | 99.2742 | 71.6392 | 46652 | 246 | 46641 | 341 | 63 | 18.4751 | |
dgrover-gatk | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 73.2484 | 42 | 1 | 42 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l100_m2_e1 | homalt | 99.7116 | 99.4999 | 99.9241 | 60.6444 | 27657 | 139 | 27657 | 21 | 16 | 76.1905 | |
dgrover-gatk | SNP | * | map_l125_m0_e0 | * | 98.9327 | 98.9889 | 98.8765 | 77.4655 | 19189 | 196 | 19186 | 218 | 48 | 22.0183 | |
dgrover-gatk | SNP | * | map_l125_m0_e0 | het | 98.7051 | 99.0287 | 98.3836 | 80.4812 | 12541 | 123 | 12538 | 206 | 40 | 19.4175 | |
dgrover-gatk | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.5000 | 9 | 0 | 9 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l125_m0_e0 | homalt | 99.3639 | 98.9124 | 99.8196 | 67.9886 | 6639 | 73 | 6639 | 12 | 8 | 66.6667 | |
dgrover-gatk | SNP | * | map_l125_m1_e0 | * | 99.3215 | 99.3139 | 99.3291 | 72.7346 | 45016 | 311 | 45010 | 304 | 68 | 22.3684 | |
dgrover-gatk | SNP | * | map_l125_m1_e0 | het | 99.1524 | 99.3097 | 98.9956 | 76.1623 | 28196 | 196 | 28190 | 286 | 55 | 19.2308 | |
dgrover-gatk | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 72.3810 | 29 | 1 | 29 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l125_m1_e0 | homalt | 99.6085 | 99.3256 | 99.8929 | 63.9547 | 16791 | 114 | 16791 | 18 | 13 | 72.2222 | |
dgrover-gatk | SNP | * | map_l125_m2_e0 | * | 99.3279 | 99.3194 | 99.3363 | 74.2156 | 46405 | 318 | 46399 | 310 | 69 | 22.2581 | |
dgrover-gatk | SNP | * | map_l125_m2_e0 | het | 99.1639 | 99.3212 | 99.0070 | 77.2838 | 29119 | 199 | 29113 | 292 | 56 | 19.1781 | |
dgrover-gatk | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.6075 | 99.3209 | 99.8958 | 66.5083 | 17257 | 118 | 17257 | 18 | 13 | 72.2222 | |
dgrover-gatk | SNP | * | map_l125_m2_e1 | * | 99.3336 | 99.3263 | 99.3409 | 74.2508 | 46884 | 318 | 46878 | 311 | 69 | 22.1865 | |
dgrover-gatk | SNP | * | map_l125_m2_e1 | het | 99.1713 | 99.3286 | 99.0144 | 77.3174 | 29441 | 199 | 29435 | 293 | 56 | 19.1126 | |
dgrover-gatk | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.6110 | 99.3269 | 99.8967 | 66.5258 | 17414 | 118 | 17414 | 18 | 13 | 72.2222 | |
dgrover-gatk | SNP | * | map_l150_m0_e0 | * | 98.7537 | 98.7949 | 98.7125 | 82.2666 | 11887 | 145 | 11884 | 155 | 29 | 18.7097 | |
dgrover-gatk | SNP | * | map_l150_m0_e0 | het | 98.4616 | 98.7657 | 98.1593 | 84.6929 | 7842 | 98 | 7839 | 147 | 23 | 15.6463 | |
dgrover-gatk | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l150_m0_e0 | homalt | 99.3242 | 98.8506 | 99.8025 | 74.1808 | 4042 | 47 | 4042 | 8 | 6 | 75.0000 | |
dgrover-gatk | SNP | * | map_l150_m1_e0 | * | 99.1521 | 99.1473 | 99.1569 | 77.1188 | 30348 | 261 | 30342 | 258 | 59 | 22.8682 | |
dgrover-gatk | SNP | * | map_l150_m1_e0 | het | 98.9459 | 99.1510 | 98.7416 | 80.1493 | 19152 | 164 | 19146 | 244 | 49 | 20.0820 | |
dgrover-gatk | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 76.8293 | 19 | 1 | 19 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.5103 | 99.1484 | 99.8749 | 68.8906 | 11177 | 96 | 11177 | 14 | 10 | 71.4286 | |
dgrover-gatk | SNP | * | map_l150_m2_e0 | * | 99.1679 | 99.1680 | 99.1679 | 78.4218 | 31587 | 265 | 31581 | 265 | 60 | 22.6415 | |
dgrover-gatk | SNP | * | map_l150_m2_e0 | het | 98.9689 | 99.1805 | 98.7582 | 81.1353 | 19968 | 165 | 19962 | 251 | 50 | 19.9203 | |
dgrover-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.5153 | 99.1538 | 99.8795 | 71.2083 | 11600 | 99 | 11600 | 14 | 10 | 71.4286 | |
dgrover-gatk | SNP | * | map_l150_m2_e1 | * | 99.1741 | 99.1773 | 99.1710 | 78.4616 | 31945 | 265 | 31939 | 267 | 60 | 22.4719 | |
dgrover-gatk | SNP | * | map_l150_m2_e1 | het | 98.9757 | 99.1897 | 98.7625 | 81.1801 | 20198 | 165 | 20192 | 253 | 50 | 19.7628 | |
dgrover-gatk | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.5206 | 99.1629 | 99.8808 | 71.2164 | 11728 | 99 | 11728 | 14 | 10 | 71.4286 | |
dgrover-gatk | SNP | * | map_l250_m0_e0 | * | 97.6090 | 97.5176 | 97.7006 | 93.8613 | 2082 | 53 | 2082 | 49 | 10 | 20.4082 | |
dgrover-gatk | SNP | * | map_l250_m0_e0 | het | 97.2149 | 97.3440 | 97.0861 | 94.4551 | 1466 | 40 | 1466 | 44 | 7 | 15.9091 | |
dgrover-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
dgrover-gatk | SNP | * | map_l250_m0_e0 | homalt | 98.5600 | 97.9332 | 99.1948 | 91.6845 | 616 | 13 | 616 | 5 | 3 | 60.0000 | |
dgrover-gatk | SNP | * | map_l250_m1_e0 | * | 98.3434 | 98.2276 | 98.4594 | 89.8378 | 7094 | 128 | 7094 | 111 | 29 | 26.1261 | |
dgrover-gatk | SNP | * | map_l250_m1_e0 | het | 98.0059 | 98.1914 | 97.8211 | 91.1588 | 4669 | 86 | 4669 | 104 | 24 | 23.0769 | |
dgrover-gatk | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
dgrover-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.9982 | 98.2948 | 99.7117 | 85.6084 | 2421 | 42 | 2421 | 7 | 5 | 71.4286 |