PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60501-60550 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 92.9577 | 100.0000 | 86.8421 | 97.5641 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4560 | 13 | 0 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6744 | 98.2456 | 97.1098 | 95.8000 | 168 | 3 | 168 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 96.1513 | 110 | 1 | 110 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.5437 | 55 | 2 | 55 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8378 | 98.3696 | 97.3118 | 96.0180 | 181 | 3 | 181 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 96.2930 | 120 | 1 | 120 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9866 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.9565 | 58 | 2 | 58 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8495 | 98.3784 | 97.3262 | 96.0887 | 182 | 3 | 182 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 96.3415 | 121 | 1 | 121 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.1014 | 58 | 2 | 58 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_siren | * | 99.2924 | 99.2916 | 99.2932 | 82.3565 | 3504 | 25 | 3512 | 25 | 5 | 20.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | het | 99.2553 | 99.3852 | 99.1259 | 82.2139 | 2263 | 14 | 2268 | 20 | 1 | 5.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | homalt | 99.5720 | 99.4863 | 99.6578 | 81.5178 | 1162 | 6 | 1165 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | * | 99.5471 | 99.5467 | 99.5475 | 94.9619 | 1098 | 5 | 1100 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | het | 99.4942 | 99.4220 | 99.5665 | 95.0932 | 688 | 4 | 689 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6155 | 51 | 1 | 52 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5665 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9944 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9916 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | * | * | 98.3523 | 98.1412 | 98.5642 | 55.1444 | 25607 | 485 | 25606 | 373 | 340 | 91.1528 | |
| dgrover-gatk | INDEL | D6_15 | * | het | 98.8856 | 99.4565 | 98.3212 | 62.9800 | 11529 | 63 | 11479 | 196 | 167 | 85.2041 | |
| dgrover-gatk | INDEL | D6_15 | * | hetalt | 97.1534 | 94.9352 | 99.4777 | 33.7944 | 7760 | 414 | 7809 | 41 | 39 | 95.1220 | |
| dgrover-gatk | INDEL | D6_15 | * | homalt | 98.8732 | 99.8735 | 97.8928 | 55.5601 | 6318 | 8 | 6318 | 136 | 134 | 98.5294 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | * | 98.2978 | 98.0385 | 98.5584 | 58.5437 | 5198 | 104 | 5196 | 76 | 69 | 90.7895 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | het | 99.0464 | 98.8782 | 99.2152 | 59.4430 | 3085 | 35 | 3034 | 24 | 18 | 75.0000 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 94.7256 | 93.1885 | 96.3143 | 48.2949 | 944 | 69 | 993 | 38 | 37 | 97.3684 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.4048 | 100.0000 | 98.8166 | 62.8338 | 1169 | 0 | 1169 | 14 | 14 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | * | 95.8086 | 95.3161 | 96.3062 | 36.3267 | 8608 | 423 | 8604 | 330 | 327 | 99.0909 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | het | 90.2073 | 98.2477 | 83.3834 | 68.6441 | 841 | 15 | 833 | 166 | 164 | 98.7952 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 97.2251 | 94.9945 | 99.5630 | 24.6392 | 7743 | 408 | 7747 | 34 | 33 | 97.0588 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 26.9663 | 100.0000 | 15.5844 | 70.3846 | 24 | 0 | 24 | 130 | 130 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9120 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m0_e0 | * | 99.2175 | 99.2266 | 99.2084 | 71.3904 | 32587 | 254 | 32583 | 260 | 57 | 21.9231 | |
| dgrover-gatk | SNP | * | map_l100_m0_e0 | het | 99.0469 | 99.2549 | 98.8398 | 75.0691 | 21047 | 158 | 21043 | 247 | 48 | 19.4332 | |
| dgrover-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m0_e0 | homalt | 99.5293 | 99.1738 | 99.8873 | 60.6890 | 11524 | 96 | 11524 | 13 | 9 | 69.2308 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | * | 99.4999 | 99.4779 | 99.5218 | 66.8041 | 72025 | 378 | 72014 | 346 | 78 | 22.5434 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | het | 99.3755 | 99.4665 | 99.2846 | 70.4056 | 45117 | 242 | 45106 | 325 | 62 | 19.0769 | |