PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60451-60500 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 58.3333 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1515 | 98.3778 | 97.9263 | 86.5655 | 849 | 14 | 850 | 18 | 4 | 22.2222 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9819 | 98.4772 | 97.4916 | 87.0169 | 582 | 9 | 583 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 93.6275 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0291 | 98.8372 | 99.2218 | 84.4337 | 255 | 3 | 255 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 98.8105 | 98.8095 | 98.8115 | 84.8192 | 1826 | 22 | 1829 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 98.6818 | 98.9247 | 98.4401 | 85.0991 | 1196 | 13 | 1199 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 90.5579 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4073 | 99.1554 | 99.6604 | 83.4225 | 587 | 5 | 587 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 98.8260 | 98.7990 | 98.8530 | 85.3498 | 1892 | 23 | 1896 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6907 | 98.8854 | 98.4968 | 85.5954 | 1242 | 14 | 1245 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.6463 | 91.6667 | 97.8261 | 90.8367 | 44 | 4 | 45 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.4258 | 99.1817 | 99.6711 | 84.0629 | 606 | 5 | 606 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8405 | 98.8138 | 98.8671 | 85.4314 | 1916 | 23 | 1920 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 98.7031 | 98.8959 | 98.5110 | 85.7047 | 1254 | 14 | 1257 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.9695 | 92.1569 | 97.9592 | 90.4854 | 47 | 4 | 48 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.4341 | 99.1935 | 99.6759 | 84.1347 | 615 | 5 | 615 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7938 | 98.1855 | 97.4052 | 89.6850 | 487 | 9 | 488 | 13 | 3 | 23.0769 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5585 | 98.2609 | 96.8661 | 90.0256 | 339 | 6 | 340 | 11 | 1 | 9.0909 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 87.7704 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5322 | 98.6213 | 98.4432 | 87.6162 | 1073 | 15 | 1075 | 17 | 4 | 23.5294 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2870 | 98.6226 | 97.9536 | 88.0013 | 716 | 10 | 718 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8188 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.1379 | 98.8539 | 99.4236 | 85.6730 | 345 | 4 | 345 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6027 | 98.6877 | 98.5179 | 88.1508 | 1128 | 15 | 1130 | 17 | 4 | 23.5294 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 98.3718 | 98.6911 | 98.0545 | 88.4753 | 754 | 10 | 756 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.7447 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1736 | 98.9011 | 99.4475 | 86.3961 | 360 | 4 | 360 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6196 | 98.7035 | 98.5357 | 88.1988 | 1142 | 15 | 1144 | 17 | 4 | 23.5294 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 98.3844 | 98.7013 | 98.0695 | 88.5449 | 760 | 10 | 762 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.8333 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.3921 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4236 | 97.9239 | 96.9283 | 92.3837 | 283 | 6 | 284 | 9 | 1 | 11.1111 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0684 | 98.0198 | 96.1353 | 92.6648 | 198 | 4 | 199 | 8 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.8795 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1921 | 98.3264 | 98.0583 | 89.8594 | 705 | 12 | 707 | 14 | 3 | 21.4286 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 97.9436 | 98.5477 | 97.3469 | 90.2488 | 475 | 7 | 477 | 13 | 2 | 15.3846 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3684 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.8962 | 98.2456 | 99.5556 | 87.8837 | 224 | 4 | 224 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3008 | 98.4273 | 98.1747 | 90.2973 | 751 | 12 | 753 | 14 | 3 | 21.4286 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0706 | 98.6381 | 97.5096 | 90.6250 | 507 | 7 | 509 | 13 | 2 | 15.3846 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6562 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9605 | 98.3471 | 99.5816 | 88.5151 | 238 | 4 | 238 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2053 | 98.3290 | 98.0818 | 90.2929 | 765 | 13 | 767 | 15 | 4 | 26.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0028 | 98.4674 | 97.5425 | 90.6603 | 514 | 8 | 516 | 13 | 2 | 15.3846 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3282 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7854 | 98.3871 | 99.1870 | 88.4507 | 244 | 4 | 244 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 94.8454 | 100.0000 | 90.1961 | 97.6023 | 46 | 0 | 46 | 5 | 0 | 0.0000 | |