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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1187 1188 1189 1190 1191 1192 1193 1194 1195 ... 1720 1721 » 59501-59550 / 86044 show all
dgrover-gatk	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	98.6207	2	0	2	0	0
dgrover-gatk	SNP	ti	segdup	homalt	99.9067	99.8534	99.9600	87.5169	7494	11	7494	3	3	100.0000
dgrover-gatk	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	tech_badpromoters	*	98.8235	98.8235	98.8235	45.5128	84	1	84	1	1	100.0000
dgrover-gatk	SNP	ti	tech_badpromoters	het	98.8506	97.7273	100.0000	48.1928	43	1	43	0	0
dgrover-gatk	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	42.4658	41	0	41	1	1	100.0000
dgrover-gatk	SNP	tv	*	*	99.9211	99.9611	99.8812	22.3092	969313	377	969227	1153	81	7.0252
dgrover-gatk	SNP	tv	*	het	99.8830	99.9556	99.8105	23.6829	591433	263	591362	1123	57	5.0757
dgrover-gatk	SNP	tv	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
dgrover-gatk	SNP	tv	*	homalt	99.9813	99.9706	99.9920	19.9848	377012	111	376997	30	24	80.0000
dgrover-gatk	SNP	tv	HG002complexvar	*	99.9486	99.9236	99.9736	22.0729	245964	188	245873	65	32	49.2308
dgrover-gatk	SNP	tv	HG002complexvar	het	99.9396	99.9138	99.9655	21.5720	150601	130	150525	52	21	40.3846
dgrover-gatk	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.3636	308	2	308	0	0
dgrover-gatk	SNP	tv	HG002complexvar	homalt	99.9637	99.9411	99.9863	22.7977	95055	56	95040	13	11	84.6154
dgrover-gatk	SNP	tv	HG002compoundhet	*	99.7478	99.7647	99.7310	49.0520	8902	21	8897	24	15	62.5000
dgrover-gatk	SNP	tv	HG002compoundhet	het	99.6470	99.6790	99.6151	55.4242	4658	15	4658	18	10	55.5556
dgrover-gatk	SNP	tv	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	22.7518	859	3	859	0	0
dgrover-gatk	SNP	tv	HG002compoundhet	homalt	99.8671	99.9115	99.8228	42.6879	3385	3	3380	6	5	83.3333
dgrover-gatk	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	func_cds	*	99.9085	99.9771	99.8400	29.8268	4370	1	4369	7	0	0.0000
dgrover-gatk	SNP	tv	func_cds	het	99.8496	99.9624	99.7370	32.6247	2656	1	2655	7	0	0.0000
dgrover-gatk	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	58.3333	10	0	10	0	0
dgrover-gatk	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	24.6351	1704	0	1704	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3391	99.1425	99.5364	69.3276	1503	13	1503	7	2	28.5714
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0399	98.7903	99.2908	71.3498	980	12	980	7	2	28.5714
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.4942	523	1	523	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5765	99.8591	99.2956	64.7620	27639	39	27629	196	19	9.6939
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3936	99.8748	98.9170	66.2587	17546	22	17536	192	15	7.8125
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	83.0986	12	1	12	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9009	99.8415	99.9603	61.7282	10081	16	10081	4	4	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4073	99.5608	99.2542	75.3973	14507	64	14507	109	12	11.0092
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1542	99.4744	98.8359	77.1224	9085	48	9085	107	10	9.3458
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	87.5000	15	0	15	0	0
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8338	99.7050	99.9630	71.6940	5407	16	5407	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5499	99.3263	99.7744	49.3526	1327	9	1327	3	0	0.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2958	98.9474	99.6466	51.0098	846	9	846	3	0	0.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	46.0762	481	0	481	0	0

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