PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5801-5850 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 89.6438 | 88.9452 | 90.3535 | 42.9428 | 33712 | 4190 | 54335 | 5801 | 4069 | 70.1431 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.8743 | 94.4038 | 89.4769 | 44.0923 | 13799 | 818 | 39955 | 4699 | 3029 | 64.4605 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 88.1620 | 79.3519 | 99.1726 | 31.2754 | 10922 | 2842 | 2517 | 21 | 18 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.0202 | 94.4334 | 91.6486 | 40.7109 | 8991 | 530 | 11863 | 1081 | 1022 | 94.5421 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.6276 | 91.2822 | 91.9757 | 41.4101 | 29203 | 2789 | 47992 | 4187 | 3097 | 73.9670 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4659 | 95.5595 | 91.4621 | 42.7719 | 11965 | 556 | 34730 | 3242 | 2192 | 67.6126 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 90.2790 | 82.8456 | 99.1780 | 30.0661 | 9200 | 1905 | 2413 | 20 | 17 | 85.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.0704 | 96.0794 | 92.1437 | 38.7632 | 8038 | 328 | 10849 | 925 | 888 | 96.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.0572 | 89.8904 | 90.2247 | 50.1569 | 38954 | 4381 | 59902 | 6490 | 4175 | 64.3297 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.9906 | 94.9155 | 89.2405 | 50.9643 | 16913 | 906 | 43453 | 5239 | 3113 | 59.4197 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 88.1323 | 79.3116 | 99.1606 | 35.6652 | 11129 | 2903 | 2599 | 22 | 19 | 86.3636 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.4075 | 95.0192 | 91.8496 | 49.4485 | 10912 | 572 | 13850 | 1229 | 1043 | 84.8657 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.6261 | 95.9485 | 93.3397 | 58.3275 | 17430 | 736 | 20671 | 1475 | 1218 | 82.5763 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.9935 | 92.8372 | 93.1502 | 44.3921 | 33971 | 2621 | 59822 | 4399 | 3170 | 72.0618 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.5069 | 96.4277 | 92.6612 | 46.2676 | 15197 | 563 | 42020 | 3328 | 2198 | 66.0457 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 90.4993 | 83.4558 | 98.8412 | 37.5745 | 8742 | 1733 | 2900 | 34 | 26 | 76.4706 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.1482 | 96.8620 | 93.4939 | 39.6090 | 10032 | 325 | 14902 | 1037 | 946 | 91.2247 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 56.1509 | 52.5940 | 60.2239 | 47.9612 | 1105 | 996 | 1614 | 1066 | 694 | 65.1032 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 65.1903 | 73.6735 | 58.4590 | 47.5626 | 361 | 129 | 1396 | 992 | 627 | 63.2056 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 59.6413 | 42.4920 | 100.0000 | 90.0000 | 532 | 720 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 65.9107 | 59.0529 | 74.5704 | 50.3413 | 212 | 147 | 217 | 74 | 67 | 90.5405 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9022 | 99.1118 | 98.6934 | 54.7879 | 28009 | 251 | 51137 | 677 | 94 | 13.8848 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7947 | 99.0383 | 98.5524 | 55.6705 | 16271 | 158 | 31384 | 461 | 49 | 10.6291 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8196 | 92.1495 | 99.7942 | 70.9504 | 493 | 42 | 485 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2214 | 99.5485 | 98.8965 | 52.5869 | 11245 | 51 | 19268 | 215 | 45 | 20.9302 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.5915 | 75.0000 | 40.4930 | 99.8509 | 93 | 31 | 115 | 169 | 4 | 2.3669 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 54.3940 | 75.8621 | 42.3963 | 99.8352 | 66 | 21 | 92 | 125 | 2 | 1.6000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 56.2500 | 100.0000 | 9 | 7 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 49.0231 | 85.7143 | 34.3284 | 99.8804 | 18 | 3 | 23 | 44 | 2 | 4.5455 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4780 | 96.5462 | 96.4099 | 50.7305 | 19176 | 686 | 28090 | 1046 | 443 | 42.3518 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.8049 | 97.4163 | 96.2011 | 51.9614 | 10821 | 287 | 18967 | 749 | 273 | 36.4486 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.8071 | 88.7770 | 99.4413 | 46.0843 | 2381 | 301 | 890 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.4720 | 98.3860 | 96.5748 | 48.1258 | 5974 | 98 | 8233 | 292 | 166 | 56.8493 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.9455 | 85.0094 | 82.9080 | 59.5221 | 2257 | 398 | 3216 | 663 | 302 | 45.5505 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.6204 | 89.4628 | 82.0945 | 59.1015 | 866 | 102 | 2728 | 595 | 253 | 42.5210 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 86.2527 | 79.1632 | 94.7368 | 71.2121 | 946 | 249 | 18 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.9612 | 90.4472 | 87.5233 | 61.4224 | 445 | 47 | 470 | 67 | 49 | 73.1343 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||