PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57951-58000 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2070 | 98.3037 | 98.1104 | 53.8870 | 5969 | 103 | 5971 | 115 | 80 | 69.5652 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.5839 | 81.3183 | 83.8895 | 82.0997 | 2159 | 496 | 2187 | 420 | 360 | 85.7143 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.4418 | 90.8058 | 70.6058 | 71.2226 | 879 | 89 | 944 | 393 | 338 | 86.0051 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 80.7503 | 68.3682 | 98.6094 | 40.8377 | 817 | 378 | 780 | 11 | 9 | 81.8182 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.3656 | 94.1057 | 96.6597 | 54.6402 | 463 | 29 | 463 | 16 | 13 | 81.2500 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6258 | 94.3116 | 94.9422 | 66.8176 | 6350 | 383 | 6401 | 341 | 317 | 92.9619 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2061 | 98.4144 | 92.2003 | 46.1270 | 3600 | 58 | 3700 | 313 | 294 | 93.9297 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 80.0119 | 67.3889 | 98.4536 | 37.0811 | 622 | 301 | 573 | 9 | 9 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.9998 | 98.8848 | 99.1150 | 44.5935 | 2128 | 24 | 2128 | 19 | 14 | 73.6842 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 71.7925 | 70.7207 | 72.8972 | 84.2415 | 157 | 65 | 156 | 58 | 51 | 87.9310 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.0000 | 84.0000 | 42.0000 | 67.7419 | 42 | 8 | 42 | 58 | 51 | 87.9310 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 70.4663 | 54.4000 | 100.0000 | 33.0000 | 68 | 57 | 67 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 37.3333 | 47 | 0 | 47 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | * | 97.3109 | 97.1209 | 97.5016 | 98.2621 | 1518 | 45 | 1522 | 39 | 11 | 28.2051 | |
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | het | 97.1755 | 97.3555 | 96.9961 | 85.9783 | 994 | 27 | 1001 | 31 | 7 | 22.5806 | |
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | hetalt | 80.4899 | 69.6970 | 95.2381 | 93.4375 | 23 | 10 | 20 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | homalt | 98.5251 | 98.4283 | 98.6220 | 83.5599 | 501 | 8 | 501 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | * | 97.4160 | 97.1835 | 97.6497 | 97.4833 | 3485 | 101 | 3490 | 84 | 39 | 46.4286 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | het | 97.5114 | 97.9418 | 97.0848 | 83.6025 | 2189 | 46 | 2198 | 66 | 29 | 43.9394 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 82.7545 | 71.7742 | 97.7011 | 88.8031 | 89 | 35 | 85 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.5306 | 98.3700 | 98.6917 | 82.5435 | 1207 | 20 | 1207 | 16 | 9 | 56.2500 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | * | 97.4507 | 97.2380 | 97.6643 | 97.6120 | 3591 | 102 | 3596 | 86 | 39 | 45.3488 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | het | 97.5246 | 97.9627 | 97.0903 | 84.4521 | 2260 | 47 | 2269 | 68 | 29 | 42.6471 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 82.9138 | 72.0000 | 97.7273 | 89.6104 | 90 | 35 | 86 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5703 | 98.4140 | 98.7271 | 83.6796 | 1241 | 20 | 1241 | 16 | 9 | 56.2500 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | * | 97.3869 | 97.1778 | 97.5968 | 97.6235 | 3650 | 106 | 3655 | 90 | 41 | 45.5556 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | het | 97.4787 | 97.9513 | 97.0105 | 84.5478 | 2295 | 48 | 2304 | 71 | 31 | 43.6620 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.0700 | 72.7273 | 96.8421 | 89.2290 | 96 | 36 | 92 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | homalt | 98.5133 | 98.2826 | 98.7451 | 83.8095 | 1259 | 22 | 1259 | 16 | 9 | 56.2500 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | * | 97.3294 | 97.0522 | 97.6082 | 98.7845 | 856 | 26 | 857 | 21 | 7 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | het | 97.1036 | 96.9336 | 97.2743 | 89.2313 | 569 | 18 | 571 | 16 | 4 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 96.6346 | 8 | 3 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | homalt | 98.2394 | 98.2394 | 98.2394 | 87.3609 | 279 | 5 | 279 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | * | 97.9556 | 97.7219 | 98.1905 | 98.1653 | 2059 | 48 | 2062 | 38 | 14 | 36.8421 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | het | 97.6831 | 97.6779 | 97.6883 | 86.3886 | 1304 | 31 | 1310 | 31 | 10 | 32.2581 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9056 | 98.7705 | 99.0411 | 85.3443 | 723 | 9 | 723 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | * | 98.0153 | 97.7687 | 98.2633 | 98.2577 | 2147 | 49 | 2150 | 38 | 14 | 36.8421 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | het | 97.7762 | 97.7714 | 97.7810 | 87.2105 | 1360 | 31 | 1366 | 31 | 10 | 32.2581 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.1288 | 34 | 8 | 31 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | homalt | 98.8838 | 98.6894 | 99.0789 | 86.4407 | 753 | 10 | 753 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e1 | * | 97.9512 | 97.7079 | 98.1958 | 98.2777 | 2174 | 51 | 2177 | 40 | 15 | 37.5000 | |