PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57851-57900 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | * | * | 97.4253 | 97.1646 | 97.6874 | 75.7607 | 334773 | 9769 | 335276 | 7937 | 6682 | 84.1880 | |
| egarrison-hhga | INDEL | * | * | het | 97.8735 | 98.9564 | 96.8141 | 57.0135 | 192107 | 2026 | 193181 | 6357 | 5653 | 88.9256 | |
| egarrison-hhga | INDEL | * | * | hetalt | 84.7197 | 74.1293 | 98.8404 | 62.3270 | 18708 | 6529 | 18156 | 213 | 191 | 89.6714 | |
| egarrison-hhga | INDEL | * | * | homalt | 98.9696 | 99.0301 | 98.9091 | 55.3233 | 123958 | 1214 | 123939 | 1367 | 838 | 61.3021 | |
| egarrison-hhga | INDEL | * | HG002complexvar | * | 97.4540 | 96.9352 | 97.9784 | 67.1267 | 74580 | 2358 | 74541 | 1538 | 1113 | 72.3667 | |
| egarrison-hhga | INDEL | * | HG002complexvar | het | 97.6548 | 97.3665 | 97.9448 | 54.4695 | 44995 | 1217 | 44989 | 944 | 675 | 71.5042 | |
| egarrison-hhga | INDEL | * | HG002complexvar | hetalt | 86.1120 | 77.4804 | 96.9079 | 71.2204 | 2866 | 833 | 2852 | 91 | 84 | 92.3077 | |
| egarrison-hhga | INDEL | * | HG002complexvar | homalt | 98.5044 | 98.8604 | 98.1509 | 53.6323 | 26719 | 308 | 26700 | 503 | 354 | 70.3777 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | * | 77.4600 | 76.5788 | 78.3617 | 71.3882 | 22943 | 7017 | 23485 | 6485 | 6131 | 94.5412 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | het | 60.4981 | 88.2511 | 46.0244 | 58.9093 | 3613 | 481 | 4706 | 5519 | 5300 | 96.0319 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | hetalt | 84.8570 | 74.1223 | 99.2275 | 55.5672 | 18664 | 6516 | 18112 | 141 | 123 | 87.2340 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | homalt | 61.2199 | 97.0845 | 44.7051 | 74.4521 | 666 | 20 | 667 | 825 | 708 | 85.8182 | |
| egarrison-hhga | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9914 | 8 | 2 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9443 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9340 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | func_cds | * | 99.4388 | 99.5506 | 99.3274 | 89.6520 | 443 | 2 | 443 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | func_cds | het | 99.0698 | 99.5327 | 98.6111 | 41.4634 | 213 | 1 | 213 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 35.0575 | 226 | 0 | 226 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.4994 | 78.7352 | 82.3445 | 83.8017 | 7931 | 2142 | 8036 | 1723 | 1538 | 89.2629 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 80.6539 | 91.2376 | 72.2705 | 67.9116 | 3686 | 354 | 3912 | 1501 | 1377 | 91.7388 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 72.8990 | 58.1328 | 97.7209 | 46.5971 | 2223 | 1601 | 2101 | 49 | 43 | 87.7551 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.8274 | 91.5346 | 92.1220 | 61.6285 | 2022 | 187 | 2023 | 173 | 118 | 68.2081 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9555 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 100.0000 | 87.5000 | 99.3504 | 12 | 0 | 14 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 99.0385 | 2 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8373 | 2 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.2879 | 92.8692 | 93.7104 | 80.9504 | 87714 | 6735 | 88189 | 5919 | 5201 | 87.8696 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.1721 | 98.0713 | 90.5711 | 70.5632 | 47340 | 931 | 48307 | 5029 | 4714 | 93.7363 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 79.2993 | 66.3164 | 98.6030 | 66.3016 | 10224 | 5193 | 9740 | 138 | 125 | 90.5797 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.7893 | 98.0137 | 97.5659 | 71.4911 | 30150 | 611 | 30142 | 752 | 362 | 48.1383 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 88.6605 | 87.9344 | 89.3987 | 86.9048 | 57466 | 7885 | 57984 | 6876 | 6009 | 87.3909 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.6104 | 96.3123 | 83.7805 | 65.9807 | 29356 | 1124 | 30414 | 5888 | 5443 | 92.4423 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.6152 | 64.0108 | 98.5632 | 45.9265 | 10693 | 6012 | 10153 | 148 | 131 | 88.5135 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.4024 | 92.4861 | 94.3370 | 90.4803 | 1994 | 162 | 1999 | 120 | 81 | 67.5000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7394 | 94.9841 | 92.5270 | 73.6767 | 1193 | 63 | 1201 | 97 | 62 | 63.9175 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.0092 | 76.6467 | 95.4198 | 68.8095 | 128 | 39 | 125 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 94.5889 | 91.8145 | 97.5362 | 69.8295 | 673 | 60 | 673 | 17 | 14 | 82.3529 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9619 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.4477 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9583 | 2 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8337 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0535 | 96.5032 | 97.6101 | 85.2011 | 4940 | 179 | 4942 | 121 | 84 | 69.4215 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.2255 | 97.5000 | 96.9526 | 72.5894 | 2925 | 75 | 2927 | 92 | 63 | 68.4783 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.0387 | 84.9785 | 98.0296 | 74.3687 | 198 | 35 | 199 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.4782 | 96.3415 | 98.6420 | 70.2969 | 1817 | 69 | 1816 | 25 | 18 | 72.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2951 | 97.8471 | 98.7472 | 84.7253 | 3545 | 78 | 3547 | 45 | 27 | 60.0000 | |