PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1133 1134 1135 1136 1137 1138 1139 1140 1141 ... 1720 1721 » 56801-56850 / 86044 show all
egarrison-hhga	SNP	*	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	SNP	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	50.6173	80	0	80	0	0
egarrison-hhga	SNP	ti	*	*	99.9062	99.8498	99.9627	17.0848	2082379	3132	2082402	778	200	25.7069
egarrison-hhga	SNP	ti	*	het	99.8877	99.8228	99.9527	17.2025	1279619	2272	1279622	606	80	13.2013
egarrison-hhga	SNP	ti	*	hetalt	98.9708	99.1409	98.8014	49.0846	577	5	577	7	7	100.0000
egarrison-hhga	SNP	ti	*	homalt	99.9365	99.8935	99.9794	16.8582	802183	855	802203	165	113	68.4848
egarrison-hhga	SNP	ti	HG002complexvar	*	99.8425	99.7343	99.9509	17.5278	507085	1351	507107	249	148	59.4378
egarrison-hhga	SNP	ti	HG002complexvar	het	99.8118	99.6651	99.9589	16.9554	313712	1054	313715	129	51	39.5349
egarrison-hhga	SNP	ti	HG002complexvar	hetalt	98.5507	98.5507	98.5507	42.1788	204	3	204	3	3	100.0000
egarrison-hhga	SNP	ti	HG002complexvar	homalt	99.8937	99.8480	99.9395	18.4037	193169	294	193188	117	94	80.3419
egarrison-hhga	SNP	ti	HG002compoundhet	*	99.0004	98.5925	99.4116	34.5800	17232	246	17233	102	75	73.5294
egarrison-hhga	SNP	ti	HG002compoundhet	het	98.7211	97.8643	99.5931	37.6968	9302	203	9300	38	21	55.2632
egarrison-hhga	SNP	ti	HG002compoundhet	hetalt	99.5663	99.1364	100.0000	22.9530	574	5	574	0	0
egarrison-hhga	SNP	ti	HG002compoundhet	homalt	99.3116	99.4861	99.1378	31.0451	7356	38	7359	64	54	84.3750
egarrison-hhga	SNP	ti	decoy	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	decoy	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	decoy	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	func_cds	*	99.9456	99.9637	99.9275	22.3817	13782	5	13782	10	0	0.0000
egarrison-hhga	SNP	ti	func_cds	het	99.9236	99.9647	99.8825	23.1721	8501	3	8501	10	0	0.0000
egarrison-hhga	SNP	ti	func_cds	hetalt	100.0000	100.0000	100.0000	52.9412	8	0	8	0	0
egarrison-hhga	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.9919	5273	2	5273	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.6867	98.3374	99.0385	67.1791	3194	54	3193	31	11	35.4839
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.3636	98.0237	98.7058	69.2437	1984	40	1983	26	6	23.0769
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.2210	98.8562	99.5885	62.9799	1210	14	1210	5	5	100.0000
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3239	99.0379	99.6116	52.2441	27690	269	27695	108	53	49.0741
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2155	98.8292	99.6047	53.9964	17642	209	17640	70	27	38.5714
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	92.3077	100.0000	85.7143	81.5789	6	0	6	1	1	100.0000
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5195	99.4061	99.6332	48.7604	10042	60	10049	37	25	67.5676
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0697	98.8184	99.3222	69.4679	30775	368	30774	210	73	34.7619
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8292	98.5239	99.1363	69.4693	19290	289	19284	168	37	22.0238
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	91.4894	12	0	12	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5783	99.7296	99.4274	58.3882	2951	8	2952	17	2	11.7647
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.4011	99.6723	99.1314	60.3701	1825	6	1826	16	1	6.2500
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	54.5565	1126	2	1126	1	1	100.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6133	99.5263	99.7004	48.1016	3992	19	3993	12	3	25.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5478	99.4890	99.6066	49.0683	2531	13	2532	10	2	20.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	83.3333	1	0	1	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7268	99.5907	99.8632	46.2500	1460	6	1460	2	1	50.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge