PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56401-56450 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 95.6522 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 94.1176 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_siren | * | 83.2113 | 80.2326 | 86.4198 | 84.0551 | 69 | 17 | 70 | 11 | 7 | 63.6364 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | het | 86.8687 | 87.7551 | 86.0000 | 83.9744 | 43 | 6 | 43 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | hetalt | 78.8060 | 68.7500 | 92.3077 | 82.6667 | 11 | 5 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | homalt | 76.9231 | 71.4286 | 83.3333 | 85.1240 | 15 | 6 | 15 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | * | 95.7890 | 95.7447 | 95.8333 | 93.4426 | 45 | 2 | 46 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3451 | 4 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 90.6736 | 18 | 1 | 18 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | * | * | 99.2965 | 99.0761 | 99.5179 | 56.5802 | 149272 | 1392 | 149236 | 723 | 442 | 61.1342 | |
| egarrison-hhga | INDEL | I1_5 | * | het | 99.4365 | 99.3775 | 99.4956 | 58.7039 | 78549 | 492 | 78511 | 398 | 185 | 46.4824 | |
| egarrison-hhga | INDEL | I1_5 | * | hetalt | 97.2375 | 95.2479 | 99.3119 | 61.7967 | 10663 | 532 | 10681 | 74 | 69 | 93.2432 | |
| egarrison-hhga | INDEL | I1_5 | * | homalt | 99.4873 | 99.3910 | 99.5837 | 52.1988 | 60060 | 368 | 60044 | 251 | 188 | 74.9004 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | * | 98.9362 | 98.5823 | 99.2928 | 54.0549 | 32890 | 473 | 32852 | 234 | 120 | 51.2821 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | het | 98.9830 | 98.5431 | 99.4269 | 55.1160 | 17924 | 265 | 17869 | 103 | 26 | 25.2427 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | hetalt | 96.4786 | 94.7856 | 98.2332 | 69.9256 | 1636 | 90 | 1668 | 30 | 30 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | homalt | 99.1848 | 99.1225 | 99.2472 | 49.0370 | 13330 | 118 | 13315 | 101 | 64 | 63.3663 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | * | 96.1134 | 95.0631 | 97.1871 | 62.4825 | 11746 | 610 | 11747 | 340 | 264 | 77.6471 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | het | 88.5536 | 91.2941 | 85.9729 | 82.4603 | 776 | 74 | 760 | 124 | 68 | 54.8387 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | hetalt | 97.3530 | 95.2492 | 99.5519 | 56.2316 | 10646 | 531 | 10663 | 48 | 44 | 91.6667 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | homalt | 78.9281 | 98.4802 | 65.8537 | 81.8115 | 324 | 5 | 324 | 168 | 152 | 90.4762 | |
| egarrison-hhga | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | func_cds | * | 99.4475 | 100.0000 | 98.9011 | 32.0896 | 180 | 0 | 180 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | func_cds | het | 98.3333 | 100.0000 | 96.7213 | 36.4583 | 59 | 0 | 59 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0142 | 90.8795 | 95.2517 | 63.6364 | 1674 | 168 | 1665 | 83 | 41 | 49.3976 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1492 | 94.4109 | 91.9207 | 73.5164 | 625 | 37 | 603 | 53 | 16 | 30.1887 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5832 | 87.5139 | 98.2759 | 42.2886 | 785 | 112 | 798 | 14 | 12 | 85.7143 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.7833 | 93.2862 | 94.2857 | 69.6641 | 264 | 19 | 264 | 16 | 13 | 81.2500 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9336 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||