PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56301-56350 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | map_l100_m2_e1 | homalt | 99.8506 | 99.7698 | 99.9315 | 63.4220 | 27732 | 64 | 27732 | 19 | 18 | 94.7368 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | * | 99.2012 | 98.6588 | 99.7496 | 73.5088 | 19125 | 260 | 19125 | 48 | 23 | 47.9167 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | het | 98.9341 | 98.2154 | 99.6635 | 75.5931 | 12438 | 226 | 12438 | 42 | 17 | 40.4762 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m0_e0 | homalt | 99.7164 | 99.5232 | 99.9103 | 68.4370 | 6680 | 32 | 6680 | 6 | 6 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m1_e0 | * | 99.4419 | 99.0690 | 99.8177 | 68.7095 | 44905 | 422 | 44905 | 82 | 41 | 50.0000 | |
| egarrison-hhga | SNP | * | map_l125_m1_e0 | het | 99.2263 | 98.7039 | 99.7544 | 69.9636 | 28024 | 368 | 28024 | 69 | 28 | 40.5797 | |
| egarrison-hhga | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m1_e0 | homalt | 99.8075 | 99.6924 | 99.9229 | 66.3441 | 16853 | 52 | 16853 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | * | 99.4490 | 99.0882 | 99.8124 | 70.5171 | 46297 | 426 | 46297 | 87 | 41 | 47.1264 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | het | 99.2355 | 98.7312 | 99.7450 | 71.3586 | 28946 | 372 | 28946 | 74 | 28 | 37.8378 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e0 | homalt | 99.8127 | 99.7007 | 99.9250 | 68.9614 | 17323 | 52 | 17323 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | * | 99.4493 | 99.0890 | 99.8122 | 70.5609 | 46772 | 430 | 46772 | 88 | 41 | 46.5909 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | het | 99.2353 | 98.7314 | 99.7444 | 71.4034 | 29264 | 376 | 29264 | 75 | 28 | 37.3333 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e1 | homalt | 99.8144 | 99.7034 | 99.9257 | 69.0000 | 17480 | 52 | 17480 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m0_e0 | * | 99.0549 | 98.4292 | 99.6886 | 78.8145 | 11843 | 189 | 11843 | 37 | 16 | 43.2432 | |
| egarrison-hhga | SNP | * | map_l150_m0_e0 | het | 98.7297 | 97.8841 | 99.5900 | 80.6088 | 7772 | 168 | 7772 | 32 | 11 | 34.3750 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.8079 | 86.9048 | 97.2973 | 76.0905 | 146 | 22 | 144 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.2624 | 73.7143 | 95.6522 | 64.2487 | 129 | 46 | 132 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.1064 | 88.8889 | 81.6327 | 79.4118 | 40 | 5 | 40 | 9 | 5 | 55.5556 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.4234 | 53.8462 | 86.6667 | 90.1316 | 14 | 12 | 13 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 97.8261 | 1 | 2 | 0 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.2222 | 56.5217 | 100.0000 | 72.3404 | 13 | 10 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 75.8865 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7742 | 93.7500 | 100.0000 | 79.7297 | 15 | 1 | 15 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9565 | 76.9231 | 100.0000 | 67.7419 | 10 | 3 | 10 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 85.3333 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 85.1852 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 86.6142 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 92.6829 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |