PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5551-5600 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6055 | 3 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.6668 | 95.6114 | 95.7223 | 68.1753 | 90304 | 4145 | 148271 | 6626 | 3965 | 59.8400 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.3917 | 97.6114 | 95.2022 | 68.9543 | 47118 | 1153 | 98539 | 4966 | 2712 | 54.6114 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9981 | 84.0955 | 99.1351 | 58.5016 | 12965 | 2452 | 4585 | 40 | 31 | 77.5000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3828 | 98.2445 | 96.5360 | 67.1067 | 30221 | 540 | 45147 | 1620 | 1222 | 75.4321 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.6261 | 95.9485 | 93.3397 | 58.3275 | 17430 | 736 | 20671 | 1475 | 1218 | 82.5763 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.0917 | 93.8776 | 79.4984 | 70.7309 | 2024 | 132 | 2187 | 564 | 73 | 12.9433 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.7915 | 95.5414 | 76.2159 | 71.9574 | 1200 | 56 | 1426 | 445 | 60 | 13.4831 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 83.6237 | 71.8563 | 100.0000 | 63.5714 | 120 | 47 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.5470 | 96.0437 | 85.6454 | 67.9552 | 704 | 29 | 710 | 119 | 13 | 10.9244 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 67.9335 | 76.4706 | 61.1111 | 99.5774 | 13 | 4 | 11 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.2857 | 90.0000 | 50.0000 | 99.5663 | 9 | 1 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.5964 | 2 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 94.3510 | 97.7144 | 91.2114 | 71.0965 | 5002 | 117 | 5376 | 518 | 61 | 11.7761 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5488 | 98.1667 | 89.3458 | 72.6223 | 2945 | 55 | 3346 | 399 | 43 | 10.7769 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.1215 | 83.6910 | 100.0000 | 74.7801 | 195 | 38 | 86 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4272 | 98.7275 | 94.2317 | 67.6240 | 1862 | 24 | 1944 | 119 | 18 | 15.1261 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1203 | 98.5371 | 97.7070 | 73.4654 | 3570 | 53 | 3835 | 90 | 21 | 23.3333 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.2409 | 98.9242 | 97.5670 | 75.1766 | 2115 | 23 | 2366 | 59 | 11 | 18.6441 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.2449 | 85.6061 | 100.0000 | 78.4553 | 113 | 19 | 53 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5178 | 99.1870 | 97.8576 | 69.7090 | 1342 | 11 | 1416 | 31 | 10 | 32.2581 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.8582 | 76.3275 | 79.4516 | 54.8804 | 4643 | 1440 | 6519 | 1686 | 1004 | 59.5492 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.4233 | 87.4656 | 77.9307 | 54.2101 | 1905 | 273 | 5378 | 1523 | 867 | 56.9271 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.0161 | 64.7448 | 98.1308 | 54.0773 | 1763 | 960 | 105 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.4697 | 82.4873 | 86.5497 | 58.4519 | 975 | 207 | 1036 | 161 | 135 | 83.8509 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.3871 | 3 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 33.3333 | 91.4286 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 41.7808 | 0 | 0 | 0 | 85 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 32.9412 | 0 | 0 | 0 | 57 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 54.0984 | 0 | 0 | 0 | 28 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 71.2766 | 0 | 0 | 0 | 27 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 21 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 80.6452 | 0 | 0 | 0 | 6 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 65.4206 | 0 | 0 | 0 | 74 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 54.0984 | 0 | 0 | 0 | 56 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||