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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
55401-55450 / 86044 show all
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
50.2734
33.9647
96.7108
42.6363
1847359121177272
100.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
65.3933
98.2278
49.0105
39.1883
232842232824222406
99.3394
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
63.9682
59.1207
69.6815
44.3739
87416044872937983701
97.4460
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.9611
84.4804
91.7409
50.5473
37566903399306289
94.4444
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
43.9004
28.4500
96.0776
48.1986
2041513323769795
97.9381
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
62.0279
93.0174
46.5270
38.0827
2944221295433953317
97.7025
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
66.0309
61.2472
71.6250
49.8874
1082368481083442924156
96.8313
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
45.2414
29.6315
95.6081
53.7572
238856712830130123
94.6154
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
63.1837
91.9278
48.1333
41.9722
3462304348137513650
97.3074
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
90.8247
87.1204
94.8579
42.0846
23813522103114109
95.6140
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
52.2084
35.8340
96.1392
47.0737
1710306220178181
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
63.5773
97.5422
47.1569
24.3464
190548192421562141
99.3043
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
21.5835
18.1202
26.6833
26.4895
214967214588544
92.5170
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
42.5806
29.7297
75.0000
50.4762
44104391310
76.9231
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
3.5874
1.8349
80.0000
78.6325
168562054
80.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
34.9475
95.6522
21.3793
16.5708
1547155570530
92.9825
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
83.2380
80.8271
85.7971
78.5980
215512964948
97.9592
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
90.6416
91.6129
89.6907
78.8210
142131742019
95.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
55.9476
40.5405
90.2439
86.2416
15223744
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
77.8216
78.3784
77.2727
72.3618
5816852525
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
70.3015
64.9123
76.6667
98.8432
3720692116
76.1905
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
75.6646
71.4286
80.4348
98.6240
30123797
77.7778
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
58.8235
44.4444
86.9565
97.3714
452033
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
53.3333
50.0000
57.1429
99.4104
331296
66.6667
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
77.6919
72.9319
83.1165
45.6084
26899982939597575
96.3149
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
90.6327
87.6737
93.7984
45.3197
145120414529690
93.7500
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
55.5323
39.1709
95.3662
55.2807
4637196383130
96.7742
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
75.4613
91.1765
64.3669
39.3284
77575849470455
96.8085
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
40.8457
34.5247
50.0000
39.0585
454861479479439
91.6493
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
69.4825
55.4545
93.0108
50.6631
183147173139
69.2308
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
18.9437
10.5927
89.5161
64.6724
84709111139
69.2308
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
45.9790
97.3958
30.0926
23.2227
1875195453421
92.9360
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
80.6871
76.7630
85.0340
31.9444
13284021375242240
99.1736
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
94.3107
93.3144
95.3285
30.1733
656476533231
96.8750
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
60.2778
43.6644
97.2973
41.1531
25532928887
87.5000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
79.1206
94.1309
68.2390
28.6996
41726434202202
100.0000
eyeh-varpipeINDELC16_PLUSfunc_cdshomalt
0.0000
100.0000
00000
eyeh-varpipeINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
40.0000
94.1349
008128
66.6667
eyeh-varpipeINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
98.5915
00011
100.0000
eyeh-varpipeINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
50.0000
94.1748
00331
33.3333