PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55251-55300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2110 | 97.1031 | 97.3190 | 85.5164 | 838 | 25 | 1089 | 30 | 15 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0166 | 97.9695 | 98.0636 | 83.8904 | 579 | 12 | 709 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | * | 97.0472 | 96.6450 | 97.4528 | 83.5060 | 1786 | 62 | 2219 | 58 | 35 | 60.3448 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | het | 98.2562 | 98.1803 | 98.3322 | 81.6008 | 1187 | 22 | 1415 | 24 | 8 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 48.9649 | 34.0426 | 87.1795 | 93.5323 | 16 | 31 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.4137 | 98.4797 | 96.3705 | 85.1515 | 583 | 9 | 770 | 29 | 24 | 82.7586 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | * | 97.0663 | 96.7102 | 97.4251 | 83.8811 | 1852 | 63 | 2308 | 61 | 36 | 59.0164 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | het | 98.2510 | 98.1688 | 98.3333 | 82.0789 | 1233 | 23 | 1475 | 25 | 8 | 32.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 50.4742 | 35.4167 | 87.8049 | 93.6923 | 17 | 31 | 36 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.3783 | 98.5270 | 96.2560 | 85.4148 | 602 | 9 | 797 | 31 | 25 | 80.6452 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | * | 96.9835 | 96.5962 | 97.3739 | 84.0045 | 1873 | 66 | 2336 | 63 | 38 | 60.3175 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | het | 98.2268 | 98.1073 | 98.3466 | 82.2535 | 1244 | 24 | 1487 | 25 | 8 | 32.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 50.4854 | 35.2941 | 88.6364 | 93.5007 | 18 | 33 | 39 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.3013 | 98.5484 | 96.0854 | 85.4680 | 611 | 9 | 810 | 33 | 27 | 81.8182 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | * | 97.6817 | 98.1855 | 97.1831 | 88.7182 | 487 | 9 | 621 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8094 | 98.2609 | 97.3621 | 87.4018 | 339 | 6 | 406 | 11 | 4 | 36.3636 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2441 | 3 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.3470 | 97.9730 | 96.7290 | 90.0047 | 145 | 3 | 207 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | * | 97.7704 | 97.8860 | 97.6551 | 86.2578 | 1065 | 23 | 1291 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | het | 98.1053 | 98.3471 | 97.8648 | 84.7393 | 714 | 12 | 825 | 18 | 5 | 27.7778 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.9462 | 98.2808 | 97.6139 | 87.6142 | 343 | 6 | 450 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8366 | 97.9003 | 97.7730 | 86.6718 | 1119 | 24 | 1361 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | het | 98.2018 | 98.4293 | 97.9753 | 85.2570 | 752 | 12 | 871 | 18 | 5 | 27.7778 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.0237 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.0337 | 98.3516 | 97.7178 | 87.9259 | 358 | 6 | 471 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | * | 97.8272 | 97.9257 | 97.7289 | 86.7675 | 1133 | 24 | 1377 | 32 | 17 | 53.1250 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1609 | 98.4416 | 97.8818 | 85.3694 | 758 | 12 | 878 | 19 | 6 | 31.5789 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.1501 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.0724 | 98.3871 | 97.7597 | 87.9775 | 366 | 6 | 480 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | * | 97.0408 | 97.9239 | 96.1735 | 91.2206 | 283 | 6 | 377 | 15 | 8 | 53.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0550 | 98.0198 | 96.1089 | 90.1983 | 198 | 4 | 247 | 10 | 3 | 30.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.9096 | 97.6471 | 96.1832 | 92.2623 | 83 | 2 | 126 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | * | 97.6949 | 97.9079 | 97.4828 | 88.4422 | 702 | 15 | 852 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | het | 97.9475 | 98.5477 | 97.3545 | 86.9924 | 475 | 7 | 552 | 15 | 5 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.8641 | 4 | 3 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7289 | 97.8070 | 97.6510 | 89.7805 | 223 | 5 | 291 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0741 | 98.6381 | 97.5166 | 87.5310 | 507 | 7 | 589 | 15 | 5 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.9789 | 4 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.8628 | 97.9339 | 97.7918 | 89.9684 | 237 | 5 | 310 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | * | 97.7557 | 97.9434 | 97.5687 | 88.8732 | 762 | 16 | 923 | 23 | 13 | 56.5217 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0041 | 98.4674 | 97.5450 | 87.6065 | 514 | 8 | 596 | 15 | 5 | 33.3333 | |