PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55151-55200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.4599 | 71.6987 | 84.2278 | 56.4520 | 11527 | 4550 | 21313 | 3991 | 3815 | 95.5901 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.9543 | 91.5421 | 94.4108 | 58.8410 | 5877 | 543 | 11520 | 682 | 569 | 83.4311 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 53.7340 | 37.1777 | 96.8750 | 57.0119 | 2192 | 3704 | 3317 | 107 | 99 | 92.5234 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 77.4574 | 91.9436 | 66.9147 | 52.7787 | 3458 | 303 | 6476 | 3202 | 3147 | 98.2823 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 70.1135 | 58.5834 | 87.2943 | 32.4261 | 3358 | 2374 | 19787 | 2880 | 2850 | 98.9583 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.9702 | 92.4431 | 95.5486 | 30.3243 | 1260 | 103 | 11269 | 525 | 504 | 96.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 59.5793 | 42.8121 | 97.9353 | 47.2358 | 1629 | 2176 | 3178 | 67 | 62 | 92.5373 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0161 | 83.1560 | 70.0052 | 27.1233 | 469 | 95 | 5340 | 2288 | 2284 | 99.8252 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.0167 | 3.3981 | 26.2295 | 42.4528 | 7 | 199 | 32 | 90 | 74 | 82.2222 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 1.1080 | 0.5587 | 66.6667 | 84.2105 | 1 | 178 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 13.8298 | 27.6923 | 0 | 0 | 13 | 81 | 68 | 83.9506 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.4672 | 95.4477 | 99.5740 | 49.7805 | 2537 | 121 | 31556 | 135 | 135 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.8200 | 97.9622 | 99.6930 | 47.9840 | 1346 | 28 | 19485 | 60 | 60 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.7090 | 85.4430 | 98.9667 | 76.0780 | 270 | 46 | 862 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2328 | 95.1446 | 99.4146 | 48.4901 | 921 | 47 | 11209 | 66 | 66 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.2621 | 100.0000 | 83.9286 | 99.8242 | 1 | 0 | 141 | 27 | 26 | 96.2963 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 86.4865 | 99.7553 | 0 | 0 | 96 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7735 | 1 | 0 | 17 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 70.0000 | 99.9063 | 0 | 0 | 28 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 84.5812 | 78.6612 | 91.4649 | 48.1133 | 3067 | 832 | 10502 | 980 | 908 | 92.6531 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.6758 | 93.5408 | 95.8387 | 47.4428 | 1593 | 110 | 5988 | 260 | 204 | 78.4615 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.1378 | 44.2087 | 94.0120 | 60.5667 | 500 | 631 | 942 | 60 | 57 | 95.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.7886 | 91.4554 | 84.4045 | 45.0390 | 974 | 91 | 3572 | 660 | 647 | 98.0303 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.2975 | 18.9591 | 48.7288 | 61.9968 | 51 | 218 | 230 | 242 | 193 | 79.7521 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.1097 | 58.8235 | 86.7550 | 74.5791 | 30 | 21 | 131 | 20 | 8 | 40.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 17.4592 | 9.6774 | 89.1304 | 79.6460 | 21 | 196 | 41 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 21.0909 | 34.8341 | 0 | 1 | 58 | 217 | 181 | 83.4101 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.8092 | 82.7619 | 93.5122 | 40.8038 | 869 | 181 | 3416 | 237 | 233 | 98.3122 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6743 | 98.7234 | 96.6472 | 38.6953 | 464 | 6 | 1989 | 69 | 66 | 95.6522 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 69.6394 | 53.9936 | 98.0519 | 57.5172 | 169 | 144 | 302 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.8983 | 88.3895 | 87.4126 | 38.3916 | 236 | 31 | 1125 | 162 | 161 | 99.3827 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.2000 | 4.0000 | 36.0000 | 51.9231 | 1 | 24 | 9 | 16 | 15 | 93.7500 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.8235 | 50.0000 | 71.4286 | 69.5652 | 1 | 1 | 5 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 23 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 17.6471 | 22.7273 | 0 | 0 | 3 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | * | 97.7243 | 97.7901 | 97.6585 | 83.5553 | 531 | 12 | 1001 | 24 | 17 | 70.8333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | het | 97.5785 | 97.5460 | 97.6109 | 82.4235 | 318 | 8 | 572 | 14 | 8 | 57.1429 | |