PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54601-54650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 51.7990 | 43.9490 | 63.0631 | 54.1322 | 69 | 88 | 70 | 41 | 41 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 63.3597 | 65.5738 | 61.2903 | 58.1081 | 40 | 21 | 38 | 24 | 24 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 23.8185 | 13.7255 | 90.0000 | 71.4286 | 7 | 44 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.4601 | 48.8889 | 58.9744 | 33.8983 | 22 | 23 | 23 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.2857 | 26.0870 | 50.0000 | 38.4615 | 12 | 34 | 12 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 42.8571 | 37.5000 | 50.0000 | 25.0000 | 3 | 5 | 3 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 25 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.0645 | 69.2308 | 50.0000 | 25.0000 | 9 | 4 | 9 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 87.8261 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 91.3580 | 4 | 1 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | * | 58.6912 | 47.1264 | 77.7778 | 85.7520 | 41 | 46 | 42 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | het | 75.4825 | 69.5652 | 82.5000 | 81.5668 | 32 | 14 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.3333 | 2 | 24 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 46.6667 | 58.3333 | 90.9091 | 7 | 8 | 7 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | * | 58.4466 | 46.6667 | 78.1818 | 86.7150 | 42 | 48 | 43 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | het | 73.7430 | 66.6667 | 82.5000 | 83.6735 | 32 | 16 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.7500 | 2 | 24 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 55.1724 | 50.0000 | 61.5385 | 90.5109 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.1706 | 46.3918 | 77.9661 | 85.9857 | 45 | 52 | 46 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | het | 75.4265 | 68.6275 | 83.7209 | 82.8685 | 35 | 16 | 36 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 12.5000 | 6.6667 | 100.0000 | 93.7500 | 2 | 28 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 91.0448 | 10 | 2 | 10 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 87.5000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.1176 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.1709 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.4737 | 85.0000 | 94.4444 | 87.2340 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 94.8052 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.8000 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.4737 | 85.0000 | 94.4444 | 88.0000 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.1220 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.5000 | 75.0000 | 91.6667 | 90.5138 | 21 | 7 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.6047 | 85.0000 | 94.7368 | 87.5000 | 17 | 3 | 18 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.4444 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.1807 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 93.0000 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.7925 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |