PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54551-54600 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 9.9949 | 5.3085 | 85.2941 | 78.6164 | 37 | 660 | 58 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.3293 | 79.5367 | 35.7513 | 30.4087 | 206 | 53 | 207 | 372 | 357 | 95.9677 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 48.1828 | 41.3707 | 57.6805 | 50.9762 | 1328 | 1882 | 1318 | 967 | 944 | 97.6215 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.8380 | 55.5936 | 72.2533 | 62.8887 | 487 | 389 | 388 | 149 | 145 | 97.3154 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 26.9886 | 15.7699 | 93.5135 | 61.5385 | 255 | 1362 | 346 | 24 | 23 | 95.8333 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 55.8170 | 81.7294 | 42.3803 | 38.8099 | 586 | 131 | 584 | 794 | 776 | 97.7330 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 56.6050 | 50.5432 | 64.3189 | 53.8060 | 977 | 956 | 968 | 537 | 532 | 99.0689 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.5287 | 71.5370 | 75.6345 | 65.0089 | 377 | 150 | 298 | 96 | 96 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 37.1836 | 23.0932 | 95.3795 | 55.7018 | 218 | 726 | 289 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 60.0572 | 82.6840 | 47.1535 | 44.1989 | 382 | 80 | 381 | 427 | 422 | 98.8290 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.7873 | 41.5540 | 56.2207 | 53.8295 | 1690 | 2377 | 1681 | 1309 | 1280 | 97.7846 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 61.2415 | 62.4812 | 60.0500 | 60.0866 | 831 | 499 | 720 | 479 | 472 | 98.5386 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 26.6884 | 15.5852 | 92.8021 | 65.3298 | 257 | 1392 | 361 | 28 | 27 | 96.4286 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.2628 | 55.3309 | 42.7960 | 40.3404 | 602 | 486 | 600 | 802 | 781 | 97.3815 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 49.9555 | 43.2887 | 59.0497 | 58.0143 | 2164 | 2835 | 2150 | 1491 | 1450 | 97.2502 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 64.1207 | 64.2111 | 64.0306 | 63.4499 | 1168 | 651 | 1004 | 564 | 554 | 98.2270 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 28.2195 | 16.6235 | 93.3071 | 68.0905 | 321 | 1610 | 474 | 34 | 33 | 97.0588 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 47.8556 | 54.0432 | 42.9393 | 43.9068 | 675 | 574 | 672 | 893 | 863 | 96.6405 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 59.1118 | 53.1250 | 66.6194 | 50.7504 | 952 | 840 | 940 | 471 | 467 | 99.1507 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.2459 | 71.4286 | 77.2947 | 60.6089 | 435 | 174 | 320 | 94 | 92 | 97.8723 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 40.8000 | 26.0204 | 94.4444 | 60.8696 | 204 | 580 | 306 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 58.5125 | 78.4461 | 46.6568 | 31.7444 | 313 | 86 | 314 | 359 | 357 | 99.4429 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.9640 | 21.0884 | 33.7719 | 34.7639 | 155 | 580 | 154 | 302 | 292 | 96.6887 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 27.9590 | 17.7515 | 65.7895 | 60.0000 | 30 | 139 | 25 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1212 | 1.5945 | 73.3333 | 80.5195 | 7 | 432 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.5283 | 92.9134 | 29.2804 | 23.5294 | 118 | 9 | 118 | 285 | 276 | 96.8421 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.1944 | 52.8736 | 64.7059 | 67.8030 | 46 | 41 | 55 | 30 | 29 | 96.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 71.5596 | 75.0000 | 68.4211 | 65.4545 | 39 | 13 | 39 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 28.0702 | 16.6667 | 88.8889 | 82.0000 | 2 | 10 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 28.6738 | 21.7391 | 42.1053 | 61.2245 | 5 | 18 | 8 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 59.1341 | 47.0588 | 79.5455 | 96.0644 | 32 | 36 | 35 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 58.5774 | 45.4545 | 82.3529 | 96.9203 | 20 | 24 | 14 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 33.3333 | 100.0000 | 87.8049 | 3 | 6 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.2642 | 60.0000 | 64.7059 | 96.4876 | 9 | 6 | 11 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 60.5212 | 53.0761 | 70.3956 | 56.0815 | 509 | 450 | 516 | 217 | 206 | 94.9309 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.1872 | 69.5761 | 70.8092 | 55.2972 | 279 | 122 | 245 | 101 | 98 | 97.0297 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 46.1571 | 30.4878 | 94.9640 | 69.3833 | 100 | 228 | 132 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.2841 | 56.5217 | 56.0484 | 43.7642 | 130 | 100 | 139 | 109 | 101 | 92.6606 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.8168 | 22.2403 | 45.2229 | 54.6898 | 137 | 479 | 142 | 172 | 160 | 93.0233 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.7379 | 29.8780 | 64.0000 | 63.0542 | 49 | 115 | 48 | 27 | 26 | 96.2963 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 8.1688 | 4.2857 | 86.9565 | 86.0606 | 15 | 335 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 46.3373 | 71.5686 | 34.2593 | 33.5385 | 73 | 29 | 74 | 142 | 132 | 92.9577 | |