PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53951-54000 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | map_siren | * | 96.0860 | 95.6406 | 96.5357 | 78.7530 | 2874 | 131 | 3316 | 119 | 92 | 77.3109 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | het | 97.1764 | 97.3825 | 96.9713 | 77.3988 | 1637 | 44 | 1889 | 59 | 41 | 69.4915 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | hetalt | 65.0004 | 49.1071 | 96.1039 | 90.3266 | 55 | 57 | 74 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | homalt | 96.7348 | 97.5248 | 95.9574 | 79.1173 | 1182 | 30 | 1353 | 57 | 49 | 85.9649 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | * | 95.8185 | 94.8064 | 96.8525 | 93.2732 | 1004 | 55 | 1077 | 35 | 29 | 82.8571 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | het | 97.0200 | 96.4684 | 97.5779 | 93.5180 | 519 | 19 | 564 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | homalt | 97.3667 | 98.3087 | 96.4427 | 92.5159 | 465 | 8 | 488 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9922 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 0.0000 | 100.0000 | 99.9858 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 8 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 13 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | * | * | 71.2994 | 63.0343 | 82.0590 | 39.8519 | 15647 | 9176 | 15734 | 3440 | 3408 | 99.0698 | |
| eyeh-varpipe | INDEL | I6_15 | * | het | 83.0781 | 80.3150 | 86.0381 | 40.9246 | 8058 | 1975 | 8048 | 1306 | 1290 | 98.7749 | |
| eyeh-varpipe | INDEL | I6_15 | * | hetalt | 42.6506 | 27.4354 | 95.7540 | 48.5714 | 2346 | 6205 | 2413 | 107 | 106 | 99.0654 | |
| eyeh-varpipe | INDEL | I6_15 | * | homalt | 77.6886 | 84.0359 | 72.2329 | 34.4939 | 5243 | 996 | 5273 | 2027 | 2012 | 99.2600 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | * | 76.1535 | 69.3656 | 84.4139 | 46.8082 | 3324 | 1468 | 3320 | 613 | 606 | 98.8581 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | het | 83.9009 | 81.8684 | 86.0369 | 46.7354 | 1928 | 427 | 1867 | 303 | 298 | 98.3498 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | hetalt | 50.4268 | 34.5053 | 93.6293 | 59.7826 | 422 | 801 | 485 | 33 | 33 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | homalt | 78.9714 | 80.2306 | 77.7510 | 38.7303 | 974 | 240 | 968 | 277 | 275 | 99.2780 | |
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | * | 36.3679 | 28.3500 | 50.7094 | 30.4777 | 2488 | 6288 | 2502 | 2432 | 2425 | 99.7122 | |
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | het | 24.7604 | 59.6154 | 15.6250 | 55.8621 | 124 | 84 | 70 | 378 | 375 | 99.2063 | |
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | hetalt | 42.7960 | 27.4218 | 97.4089 | 29.0841 | 2341 | 6196 | 2406 | 64 | 63 | 98.4375 | |
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | homalt | 2.5353 | 74.1935 | 1.2897 | 22.4317 | 23 | 8 | 26 | 1990 | 1987 | 99.8492 | |
| eyeh-varpipe | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | func_cds | * | 88.6076 | 81.3953 | 97.2222 | 32.0755 | 35 | 8 | 35 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | het | 88.3721 | 79.1667 | 100.0000 | 29.6296 | 19 | 5 | 19 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | func_cds | hetalt | 57.1429 | 50.0000 | 66.6667 | 62.5000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | homalt | 96.5517 | 93.3333 | 100.0000 | 22.2222 | 14 | 1 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.3227 | 27.8708 | 61.3176 | 55.5889 | 233 | 603 | 363 | 229 | 214 | 93.4498 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.1949 | 54.6559 | 80.7692 | 61.1940 | 135 | 112 | 189 | 45 | 43 | 95.5556 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.2616 | 10.7547 | 92.1569 | 64.7059 | 57 | 473 | 94 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.1125 | 69.4915 | 31.2500 | 41.9501 | 41 | 18 | 80 | 176 | 164 | 93.1818 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.8421 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 58.5321 | 47.8735 | 75.2959 | 43.8204 | 2544 | 2770 | 8714 | 2859 | 2841 | 99.3704 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.4487 | 74.1077 | 83.3299 | 46.2271 | 1142 | 399 | 4044 | 809 | 800 | 98.8875 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 45.1634 | 29.5192 | 96.0848 | 46.1217 | 921 | 2199 | 2356 | 96 | 96 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.4607 | 73.6600 | 54.2174 | 39.2369 | 481 | 172 | 2314 | 1954 | 1945 | 99.5394 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 55.8126 | 45.6817 | 71.7174 | 42.4460 | 2888 | 3434 | 6598 | 2602 | 2576 | 99.0008 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |