PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53901-53950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | map_siren | hetalt | 98.7189 | 98.2456 | 99.1968 | 68.8944 | 56 | 1 | 494 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_siren | homalt | 99.8945 | 99.8734 | 99.9157 | 53.2558 | 37868 | 48 | 36723 | 31 | 17 | 54.8387 | |
| eyeh-varpipe | SNP | ti | segdup | * | 98.6842 | 99.8874 | 97.5096 | 89.9888 | 19515 | 22 | 19225 | 491 | 13 | 2.6477 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| eyeh-varpipe | SNP | ti | segdup | hetalt | 99.1597 | 100.0000 | 98.3333 | 95.5390 | 2 | 0 | 59 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdup | homalt | 99.9189 | 99.9600 | 99.8777 | 88.4551 | 7502 | 3 | 7351 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9987 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | het | 0.0000 | 0.0000 | 99.9990 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9980 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | het | 80.3738 | 100.0000 | 67.1875 | 68.6275 | 44 | 0 | 43 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 44.5946 | 41 | 0 | 41 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | * | * | 98.8030 | 99.9607 | 97.6718 | 23.4743 | 969317 | 381 | 958642 | 22851 | 215 | 0.9409 | |
| eyeh-varpipe | SNP | tv | * | het | 98.0748 | 99.9564 | 96.2628 | 25.2886 | 591446 | 258 | 583371 | 22648 | 112 | 0.4945 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 83.4862 | 73.6842 | 96.2963 | 92.5000 | 14 | 5 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6596 | 99.1254 | 98.1982 | 85.1326 | 340 | 3 | 545 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7109 | 97.7273 | 97.6945 | 90.0086 | 172 | 4 | 339 | 8 | 5 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | het | 97.5684 | 98.1132 | 97.0297 | 89.2267 | 104 | 2 | 196 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.4545 | 2 | 1 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5394 | 98.5075 | 98.5714 | 90.5914 | 66 | 1 | 138 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | * | 97.8142 | 97.4308 | 98.2005 | 87.3865 | 493 | 13 | 764 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | het | 97.0787 | 96.6555 | 97.5057 | 86.7845 | 289 | 10 | 430 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.9914 | 7 | 2 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.2748 | 7 | 2 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7120 | 97.3635 | 98.0630 | 88.1407 | 517 | 14 | 810 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | het | 97.0790 | 96.5300 | 97.6344 | 87.6527 | 306 | 11 | 454 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | * | 97.2973 | 100.0000 | 94.7368 | 96.7942 | 24 | 0 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 96.6013 | 9 | 0 | 25 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | het | 96.4637 | 96.6667 | 96.2617 | 94.0884 | 58 | 2 | 103 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0874 | 2 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | het | 96.7603 | 96.9697 | 96.5517 | 94.2829 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1240 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | * | 97.1292 | 97.3684 | 96.8912 | 95.0078 | 111 | 3 | 187 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2121 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.5232 | 97.8261 | 97.2222 | 95.6311 | 45 | 1 | 70 | 2 | 2 | 100.0000 | |